PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54201-54250 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 92.8980 | 89.5022 | 96.5618 | 87.1490 | 1654 | 194 | 1657 | 59 | 7 | 11.8644 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | * | 82.9982 | 72.7081 | 96.6811 | 87.1519 | 8256 | 3099 | 8244 | 283 | 238 | 84.0989 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | homalt | 99.3593 | 99.6495 | 99.0708 | 87.1531 | 853 | 3 | 853 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.1548 | 197 | 1 | 197 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | homalt | 84.8014 | 75.8761 | 96.1064 | 87.1554 | 931 | 296 | 1012 | 41 | 2 | 4.8781 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2020 | 91.9487 | 96.5686 | 87.1557 | 788 | 69 | 788 | 28 | 21 | 75.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 42.5532 | 30.3030 | 71.4286 | 87.1560 | 10 | 23 | 10 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.1560 | 0 | 0 | 0 | 14 | 3 | 21.4286 | ||
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | homalt | 72.9560 | 99.6564 | 57.5397 | 87.1560 | 290 | 1 | 290 | 214 | 213 | 99.5327 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.0290 | 92.4528 | 97.7528 | 87.1573 | 98 | 8 | 87 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1684 | 91.4205 | 99.2366 | 87.1594 | 1300 | 122 | 1300 | 10 | 3 | 30.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.0000 | 100.0000 | 66.6667 | 87.1622 | 1 | 0 | 38 | 19 | 11 | 57.8947 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 75.8773 | 72.5712 | 79.4989 | 87.1649 | 2241 | 847 | 2253 | 581 | 59 | 10.1549 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | * | 97.0145 | 97.3908 | 96.6411 | 87.1665 | 3658 | 98 | 3654 | 127 | 20 | 15.7480 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3235 | 99.1976 | 99.4496 | 87.1665 | 2349 | 19 | 2349 | 13 | 13 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.1416 | 98.0769 | 88.6792 | 87.1671 | 51 | 1 | 47 | 6 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | het | 83.0777 | 72.2504 | 97.7221 | 87.1675 | 427 | 164 | 429 | 10 | 3 | 30.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | homalt | 96.9786 | 97.2868 | 96.6724 | 87.1688 | 753 | 21 | 1133 | 39 | 35 | 89.7436 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | * | 98.2517 | 98.5762 | 97.9294 | 87.1694 | 2077 | 30 | 2081 | 44 | 7 | 15.9091 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 83.4783 | 75.0000 | 94.1176 | 87.1698 | 33 | 11 | 32 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | het | 96.2825 | 95.9259 | 96.6418 | 87.1729 | 777 | 33 | 777 | 27 | 3 | 11.1111 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 87.1739 | 116 | 16 | 118 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_siren | * | 75.5000 | 73.4774 | 77.6371 | 87.1753 | 374 | 135 | 368 | 106 | 86 | 81.1321 | |
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | segdup | het | 98.7337 | 99.4597 | 98.0182 | 87.1794 | 11965 | 65 | 11969 | 242 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 87.1795 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m1_e0 | homalt | 98.0392 | 96.1538 | 100.0000 | 87.1795 | 25 | 1 | 25 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 87.1795 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 87.1795 | 2 | 4 | 2 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | homalt | 19.3548 | 14.2857 | 30.0000 | 87.1795 | 3 | 18 | 3 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.0041 | 47.0633 | 100.0000 | 87.1795 | 625 | 703 | 625 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0949 | 95.8388 | 73.3424 | 87.1802 | 1451 | 63 | 1073 | 390 | 39 | 10.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 91.5803 | 94.5692 | 88.7745 | 87.1803 | 1811 | 104 | 1811 | 229 | 65 | 28.3843 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.6930 | 98.8204 | 98.5658 | 87.1803 | 754 | 9 | 756 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | het | 98.4769 | 98.8506 | 98.1061 | 87.1814 | 516 | 6 | 518 | 10 | 2 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 87.1816 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9624 | 65.4321 | 96.4286 | 87.1854 | 53 | 28 | 54 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.1859 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.6039 | 98.1997 | 99.0115 | 87.1860 | 600 | 11 | 601 | 6 | 4 | 66.6667 | |
| anovak-vg | SNP | tv | map_l150_m0_e0 | het | 76.3189 | 87.6187 | 67.6007 | 87.1885 | 2491 | 352 | 2485 | 1191 | 350 | 29.3871 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7109 | 99.2593 | 98.1685 | 87.1891 | 536 | 4 | 536 | 10 | 4 | 40.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 98.2302 | 99.1736 | 97.3046 | 87.1892 | 720 | 6 | 722 | 20 | 3 | 15.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | het | 96.8208 | 97.1014 | 96.5418 | 87.1908 | 335 | 10 | 335 | 12 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.5375 | 83.0556 | 99.5008 | 87.1910 | 598 | 122 | 598 | 3 | 0 | 0.0000 | |