PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53851-53900 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 86.8421 | 20 | 2 | 20 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | het | 70.0000 | 60.0000 | 84.0000 | 86.8421 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | homalt | 88.2353 | 78.9474 | 100.0000 | 86.8421 | 15 | 4 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_siren | het | 97.3536 | 98.6247 | 96.1148 | 86.8437 | 4446 | 62 | 4453 | 180 | 15 | 8.3333 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 86.8469 | 282 | 2 | 282 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | homalt | 68.2473 | 94.1176 | 53.5326 | 86.8477 | 192 | 12 | 197 | 171 | 154 | 90.0585 | |
| astatham-gatk | INDEL | * | map_l100_m1_e0 | het | 95.1305 | 93.0201 | 97.3389 | 86.8492 | 2079 | 156 | 2085 | 57 | 11 | 19.2982 | |
| jlack-gatk | SNP | * | map_l150_m0_e0 | * | 93.9698 | 98.0635 | 90.2042 | 86.8496 | 11799 | 233 | 11796 | 1281 | 106 | 8.2748 | |
| anovak-vg | INDEL | * | map_l100_m2_e0 | het | 70.9065 | 67.2735 | 74.9542 | 86.8513 | 1552 | 755 | 1637 | 547 | 155 | 28.3364 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | * | 96.9175 | 94.9153 | 99.0060 | 86.8531 | 504 | 27 | 498 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6000 | 95.3125 | 100.0000 | 86.8534 | 61 | 3 | 61 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 86.8534 | 60 | 2 | 61 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 86.8571 | 0 | 0 | 0 | 23 | 10 | 43.4783 | ||
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8571 | 4 | 0 | 23 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | het | 81.5587 | 70.9290 | 95.9360 | 86.8580 | 9918 | 4065 | 9891 | 419 | 349 | 83.2936 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 96.3571 | 93.9759 | 98.8622 | 86.8583 | 780 | 50 | 782 | 9 | 2 | 22.2222 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | * | 98.3980 | 97.5040 | 99.3085 | 86.8596 | 4883 | 125 | 4883 | 34 | 18 | 52.9412 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | * | 98.4351 | 97.4311 | 99.4601 | 86.8596 | 2579 | 68 | 2579 | 14 | 7 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9466 | 96.9466 | 96.9466 | 86.8606 | 127 | 4 | 127 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9841 | 96.7866 | 99.2116 | 86.8612 | 753 | 25 | 755 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 86.8613 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | * | 97.3325 | 96.8566 | 97.8131 | 86.8634 | 493 | 16 | 492 | 11 | 2 | 18.1818 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 94.3221 | 90.0378 | 99.0345 | 86.8636 | 714 | 79 | 718 | 7 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 86.8644 | 23 | 0 | 23 | 8 | 8 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | homalt | 98.6012 | 97.4605 | 99.7689 | 86.8645 | 1727 | 45 | 1727 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | * | 92.8526 | 95.1436 | 90.6694 | 86.8647 | 1822 | 93 | 1788 | 184 | 50 | 27.1739 | |
| dgrover-gatk | INDEL | I1_5 | HG002compoundhet | het | 95.2481 | 98.5882 | 92.1269 | 86.8653 | 838 | 12 | 784 | 67 | 66 | 98.5075 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.7778 | 86.8677 | 0 | 0 | 132 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.8687 | 26 | 0 | 26 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | * | 71.4286 | 66.6667 | 76.9231 | 86.8687 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.7143 | 83.3333 | 88.2353 | 86.8726 | 30 | 6 | 30 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | homalt | 99.5025 | 99.5644 | 99.4406 | 86.8749 | 1600 | 7 | 1600 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | het | 97.2703 | 95.5155 | 99.0909 | 86.8763 | 1853 | 87 | 1853 | 17 | 8 | 47.0588 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.6667 | 93.7500 | 51.7241 | 86.8778 | 15 | 1 | 15 | 14 | 5 | 35.7143 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | het | 98.3415 | 97.9871 | 98.6985 | 86.8786 | 1363 | 28 | 1365 | 18 | 4 | 22.2222 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | het | 91.8033 | 85.7143 | 98.8235 | 86.8787 | 6 | 1 | 420 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.3103 | 98.7993 | 99.8267 | 86.8804 | 1728 | 21 | 1728 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0820 | 95.0820 | 95.0820 | 86.8817 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 86.8821 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | homalt | 41.5806 | 26.2472 | 100.0000 | 86.8829 | 2899 | 8146 | 2899 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | homalt | 99.4712 | 99.5022 | 99.4403 | 86.8852 | 1599 | 8 | 1599 | 9 | 2 | 22.2222 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | het | 48.2759 | 33.3333 | 87.5000 | 86.8852 | 2 | 4 | 7 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5857 | 99.1728 | 98.0054 | 86.8862 | 1079 | 9 | 1081 | 22 | 5 | 22.7273 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | homalt | 96.1134 | 92.8962 | 99.5614 | 86.8865 | 680 | 52 | 681 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8479 | 98.6207 | 99.0762 | 86.8887 | 858 | 12 | 858 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.3740 | 97.5806 | 99.1803 | 86.8888 | 242 | 6 | 242 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.4854 | 99.1784 | 76.6727 | 86.8957 | 845 | 7 | 848 | 258 | 212 | 82.1705 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5943 | 98.9387 | 96.2859 | 86.8966 | 4102 | 44 | 4122 | 159 | 29 | 18.2390 | |