PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51651-51700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 84.7458 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | HG002compoundhet | homalt | 61.0714 | 99.7085 | 44.0154 | 84.7468 | 684 | 2 | 684 | 870 | 867 | 99.6552 | |
| jmaeng-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.3350 | 98.6248 | 98.0469 | 84.7483 | 502 | 7 | 502 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6764 | 99.3548 | 100.0000 | 84.7525 | 154 | 1 | 154 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | homalt | 96.2599 | 93.3170 | 99.3945 | 84.7554 | 1145 | 82 | 1149 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | homalt | 96.2107 | 93.7416 | 98.8135 | 84.7573 | 2082 | 139 | 2082 | 25 | 6 | 24.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | * | 98.0661 | 98.9799 | 97.1690 | 84.7576 | 3493 | 36 | 3501 | 102 | 10 | 9.8039 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.3372 | 98.5927 | 92.2897 | 84.7602 | 10649 | 152 | 10677 | 892 | 112 | 12.5561 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.7619 | 0 | 0 | 12 | 36 | 7 | 19.4444 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.7451 | 98.7097 | 98.7805 | 84.7650 | 1377 | 18 | 1377 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 53.2753 | 57.5758 | 49.5726 | 84.7656 | 19 | 14 | 58 | 59 | 1 | 1.6949 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.5784 | 99.2038 | 97.9608 | 84.7707 | 1246 | 10 | 1249 | 26 | 4 | 15.3846 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 93.8735 | 94.6565 | 93.1034 | 84.7712 | 124 | 7 | 189 | 14 | 7 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.7716 | 31 | 2 | 30 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | * | 95.9035 | 96.4152 | 95.3972 | 84.7728 | 1291 | 48 | 1285 | 62 | 13 | 20.9677 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | homalt | 69.2990 | 63.6512 | 76.0467 | 84.7739 | 781 | 446 | 781 | 246 | 199 | 80.8943 | |
| cchapple-custom | INDEL | * | map_l100_m2_e1 | * | 95.9700 | 96.4324 | 95.5120 | 84.7746 | 3622 | 134 | 3703 | 174 | 52 | 29.8851 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9336 | 98.0047 | 99.8804 | 84.7751 | 835 | 17 | 835 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6471 | 99.4131 | 99.8821 | 84.7756 | 847 | 5 | 847 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | * | 96.5147 | 94.1704 | 98.9788 | 84.7782 | 1260 | 78 | 1260 | 13 | 3 | 23.0769 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| gduggal-bwavard | INDEL | * | map_siren | * | 91.0727 | 92.5911 | 89.6032 | 84.7790 | 6861 | 549 | 6843 | 794 | 423 | 53.2746 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | * | 83.4615 | 75.3968 | 93.4579 | 84.7795 | 95 | 31 | 100 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | het | 94.0545 | 97.8571 | 90.5363 | 84.7816 | 274 | 6 | 287 | 30 | 16 | 53.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | hetalt | 93.6170 | 88.0000 | 100.0000 | 84.7826 | 110 | 15 | 112 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.7742 | 98.3607 | 95.2381 | 84.7826 | 120 | 2 | 120 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 38.0952 | 23.5294 | 100.0000 | 84.7826 | 16 | 52 | 28 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.2857 | 84.7826 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 84.7826 | 21 | 1 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | * | 96.6887 | 95.7377 | 97.6589 | 84.7837 | 292 | 13 | 292 | 7 | 5 | 71.4286 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8848 | 96.0000 | 97.7860 | 84.7838 | 264 | 11 | 265 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | homalt | 98.8497 | 98.8105 | 98.8889 | 84.7844 | 1246 | 15 | 1246 | 14 | 7 | 50.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | homalt | 68.2068 | 63.0081 | 74.3405 | 84.7866 | 310 | 182 | 310 | 107 | 94 | 87.8505 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8604 | 96.7742 | 98.9712 | 84.7887 | 480 | 16 | 481 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I6_15 | HG002compoundhet | het | 86.6987 | 97.5962 | 77.9904 | 84.7889 | 203 | 5 | 163 | 46 | 45 | 97.8261 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 84.7973 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | het | 95.1055 | 95.6790 | 94.5388 | 84.7999 | 775 | 35 | 779 | 45 | 6 | 13.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.7470 | 80.0000 | 94.7368 | 84.8000 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | * | het | 48.6270 | 100.0000 | 32.1240 | 84.8018 | 7 | 0 | 425 | 898 | 137 | 15.2561 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | het | 92.8051 | 97.9602 | 88.1654 | 84.8061 | 18922 | 394 | 18699 | 2510 | 124 | 4.9402 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.5075 | 98.5075 | 98.5075 | 84.8073 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |