PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51451-51500 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.7133 | 98.5372 | 89.3396 | 84.5796 | 10643 | 158 | 9822 | 1172 | 111 | 9.4710 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.4428 | 98.3425 | 85.4478 | 84.5800 | 356 | 6 | 229 | 39 | 37 | 94.8718 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2072 | 98.6486 | 99.7722 | 84.5803 | 438 | 6 | 438 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7786 | 91.3262 | 96.3664 | 84.5822 | 1274 | 121 | 1273 | 48 | 35 | 72.9167 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.3649 | 82.7068 | 84.0336 | 84.5855 | 110 | 23 | 100 | 19 | 10 | 52.6316 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5416 | 96.5596 | 98.5437 | 84.5866 | 421 | 15 | 406 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | homalt | 98.5323 | 98.5726 | 98.4921 | 84.5872 | 1243 | 18 | 1241 | 19 | 10 | 52.6316 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 71.4286 | 59.8086 | 88.6525 | 84.5902 | 125 | 84 | 125 | 16 | 8 | 50.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2598 | 99.1413 | 99.3785 | 84.5990 | 1501 | 13 | 1439 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0392 | 97.6562 | 98.4252 | 84.5998 | 375 | 9 | 375 | 6 | 2 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5732 | 100.0000 | 93.3735 | 84.6011 | 155 | 0 | 155 | 11 | 1 | 9.0909 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4337 | 98.8739 | 100.0000 | 84.6019 | 439 | 5 | 439 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3197 | 98.6486 | 100.0000 | 84.6046 | 438 | 6 | 438 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | het | 95.1985 | 95.9647 | 94.4444 | 84.6066 | 761 | 32 | 765 | 45 | 6 | 13.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.2606 | 98.3425 | 85.1301 | 84.6110 | 356 | 6 | 229 | 40 | 38 | 95.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4135 | 99.4135 | 99.4135 | 84.6119 | 339 | 2 | 339 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 84.6154 | 12 | 3 | 12 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8750 | 96.8750 | 96.8750 | 84.6154 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0.0000 | 84.6154 | 1 | 0 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 47.8632 | 36.3636 | 70.0000 | 84.6154 | 16 | 28 | 7 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 15.2381 | 9.1954 | 44.4444 | 84.6154 | 8 | 79 | 8 | 10 | 7 | 70.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 71 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 84.6154 | 0 | 6 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 15.7303 | 8.5366 | 100.0000 | 84.6154 | 7 | 75 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 4 | 2 | 50.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 18 | 0 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 16 | 0 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |