PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49801-49850 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 87.5000 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.5370 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.6783 | 6 | 18 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 98.6453 | 11 | 33 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.2754 | 2 | 6 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.5349 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 97.5610 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.5833 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 89.2857 | 4 | 12 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 40.0000 | 25.0000 | 100.0000 | 92.3077 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8504 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.8510 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9822 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 40.0000 | 100.0000 | 25.0000 | 98.9744 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 40.0000 | 100.0000 | 25.0000 | 96.3964 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | decoy | het | 40.0000 | 25.0000 | 100.0000 | 99.4709 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 94.1176 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 88.2353 | 1 | 3 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 40.0000 | 25.0000 | 100.0000 | 79.5455 | 11 | 33 | 36 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5802 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | SNP | tv | map_l125_m2_e0 | homalt | 39.9681 | 24.9792 | 99.9335 | 89.0706 | 1503 | 4514 | 1503 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.9604 | 56.2674 | 30.9816 | 39.7969 | 202 | 157 | 202 | 450 | 389 | 86.4444 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 39.9506 | 39.3669 | 40.5518 | 64.0084 | 485 | 747 | 485 | 711 | 356 | 50.0703 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 39.9479 | 48.7805 | 33.8235 | 55.5556 | 40 | 42 | 69 | 135 | 108 | 80.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 39.8947 | 28.8609 | 64.5870 | 56.5465 | 1994 | 4915 | 1822 | 999 | 788 | 78.8789 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | * | 39.8551 | 31.2500 | 55.0000 | 90.0498 | 10 | 22 | 11 | 9 | 5 | 55.5556 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 39.8487 | 25.0685 | 97.0961 | 38.8155 | 549 | 1641 | 1304 | 39 | 39 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.8320 | 33.8727 | 48.3358 | 55.3849 | 3412 | 6661 | 4197 | 4486 | 3438 | 76.6384 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.7830 | 26.3158 | 81.4815 | 82.9114 | 5 | 14 | 22 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | * | 39.7758 | 35.3560 | 45.4585 | 32.6471 | 3193 | 5838 | 3138 | 3765 | 3754 | 99.7078 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 39.7351 | 28.3019 | 66.6667 | 55.4455 | 15 | 38 | 30 | 15 | 15 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | homalt | 39.7004 | 24.7664 | 100.0000 | 96.2311 | 212 | 644 | 212 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | homalt | 39.6323 | 24.7168 | 99.9448 | 90.0193 | 1811 | 5516 | 1811 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 39.6215 | 29.5446 | 60.1302 | 69.5829 | 1570 | 3744 | 1570 | 1041 | 1015 | 97.5024 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.6010 | 27.0677 | 73.7500 | 90.5101 | 72 | 194 | 59 | 21 | 4 | 19.0476 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 39.5158 | 40.0000 | 39.0432 | 37.8119 | 132 | 198 | 253 | 395 | 347 | 87.8481 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | * | 39.5063 | 24.6305 | 99.7534 | 94.8804 | 2833 | 8669 | 2832 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 39.4885 | 37.0800 | 42.2316 | 61.7642 | 894 | 1517 | 897 | 1227 | 722 | 58.8427 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.4737 | 27.2727 | 71.4286 | 84.6715 | 15 | 40 | 15 | 6 | 2 | 33.3333 | |