PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49701-49750 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 42.3077 | 4 | 4 | 5 | 10 | 7 | 70.0000 | |
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | het | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | func_cds | homalt | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 90.3226 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 92.5926 | 6 | 18 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.6237 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.6140 | 5 | 15 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.0000 | 6 | 18 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l125_m2_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.9732 | 6 | 18 | 6 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 95.9732 | 6 | 18 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | HG002complexvar | * | 40.0000 | 25.0000 | 100.0000 | 96.7213 | 1 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | C6_15 | HG002complexvar | het | 40.0000 | 25.0000 | 100.0000 | 83.3333 | 1 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 3 | 6 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l250_m1_e0 | * | 40.0000 | 25.0000 | 100.0000 | 98.7179 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m0_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.0566 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | het | 40.0000 | 27.2727 | 75.0000 | 98.0952 | 3 | 8 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 91.6667 | 1 | 3 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l150_m2_e1 | het | 40.0000 | 25.0000 | 100.0000 | 98.7395 | 4 | 12 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.0099 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | * | 40.0000 | 25.0000 | 100.0000 | 99.0431 | 2 | 6 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3333 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3051 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.4444 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3051 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.0000 | 85.7143 | 26.0870 | 33.0097 | 18 | 3 | 18 | 51 | 51 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 40.0000 | 35.7143 | 45.4545 | 98.1788 | 5 | 9 | 5 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 97.6744 | 2 | 6 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 50.0000 | 33.3333 | 99.4197 | 2 | 2 | 2 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.0000 | 100.0000 | 25.0000 | 95.4545 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.4375 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 96.9697 | 2 | 6 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 40.0000 | 100.0000 | 25.0000 | 99.9965 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 40.0000 | 100.0000 | 25.0000 | 99.9650 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.9825 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D6_15 | HG002compoundhet | homalt | 40.0000 | 100.0000 | 25.0000 | 72.0117 | 24 | 0 | 24 | 72 | 72 | 100.0000 | |