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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
49651-49700 / 86044 show all
gduggal-snapvardINDELD6_15HG002compoundhethomalt
40.5797
29.1667
66.6667
85.0000
717211
100.0000
ciseli-customINDELI1_5map_l150_m2_e0homalt
40.5704
26.3682
87.9310
93.3333
531485174
57.1429
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
40.5494
35.4887
47.2934
60.0683
236429332370282
76.2162
gduggal-snapvardINDEL*decoy*
40.5405
30.0000
62.5000
99.9717
37530
0.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
40.5092
55.2023
31.9936
87.5351
1911551994234
0.9456
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.4915
37.7049
43.7229
36.0111
2338101130128
98.4615
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.4624
33.1754
51.8519
75.6757
70141706558
89.2308
anovak-vgINDELI1_5HG002compoundhethomalt
40.4620
88.4498
26.2307
64.1465
29138107130122451
81.3745
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
40.4600
27.3210
77.9449
70.7692
3098223118869
78.4091
asubramanian-gatkSNP*map_l150_m2_e1*
40.4494
25.3710
99.7071
94.4964
8172240388169246
25.0000
mlin-fermikitSNP*map_l250_m0_e0*
40.4330
27.1194
79.4239
82.2628
5791556579150132
88.0000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_51to200*
40.4040
47.6190
35.0877
98.8711
202220370
0.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
40.3639
25.5814
95.6173
48.0711
902262417898281
98.7805
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
40.3639
25.5814
95.6173
48.0711
902262417898281
98.7805
anovak-vgINDELI1_5HG002compoundhet*
40.3635
33.5626
50.6211
62.9728
41478209562454864446
81.0427
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
40.3615
29.2553
65.0602
70.8772
55133542919
65.5172
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.3388
26.9615
80.0636
58.9286
7562048755188171
90.9574
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.3286
26.9258
80.2982
58.7796
7552049754185171
92.4324
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
40.3265
76.3636
27.3973
91.1318
1263912031810
3.1447
ckim-vqsrSNP*map_l150_m2_e1homalt
40.3024
25.2389
99.9665
90.9405
29858842298511
100.0000
asubramanian-gatkSNP*map_l150_m2_e0*
40.2806
25.2386
99.7022
94.5086
8039238138036246
25.0000
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
40.2625
37.4075
43.5894
47.0109
35385920351245454494
98.8779
asubramanian-gatkSNP*map_l100_m0_e0homalt
40.2612
25.2065
99.9659
86.1052
29298691292910
0.0000
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
40.2391
29.5082
63.2353
29.4815
3686301175141
80.5714
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.2265
37.0781
43.9591
50.2516
41096973408652095192
99.6736
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
40.2264
28.2838
69.6252
65.8356
15033811141261690
14.6104
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
40.2175
43.3884
37.4784
42.9557
42054886814481173
81.0083
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
40.2163
27.6358
73.8220
36.9637
3469061415012
24.0000
mlin-fermikitSNPtvmap_l250_m1_e0het
40.2130
25.3497
97.2103
81.1869
4531334453130
0.0000
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
40.2067
39.4727
40.9685
65.1113
10481607106615361023
66.6016
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
40.1642
32.5939
52.3148
73.3785
7201489904824648
78.6408
asubramanian-gatkSNPtvmap_l125_m2_e1homalt
40.1526
25.1235
99.9345
89.0207
15264548152610
0.0000
gduggal-bwaplatINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
40.1515
25.7282
91.3793
89.3186
531535354
80.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.1458
27.7350
72.6592
88.8238
1804691947328
38.3562
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
40.1132
30.9859
56.8627
26.6187
4498584440
90.9091
ciseli-customINDELI1_5map_l150_m2_e1homalt
40.1098
25.9804
87.9310
93.5196
531515174
57.1429
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
40.1003
26.3158
84.2105
99.8551
15421630
0.0000
ckim-isaacINDELD6_15HG002compoundhethomalt
40.0881
54.1667
31.8182
65.3543
1311143029
96.6667
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
40.0802
45.2489
35.9712
97.0872
10012110017816
8.9888
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.0753
30.3227
59.0755
67.9189
19174405191713281307
98.4187
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.0753
30.3227
59.0755
67.9189
19174405191713281307
98.4187
ckim-vqsrSNP*map_l150_m2_e0homalt
40.0656
25.0534
99.9659
91.0042
29318768293111
100.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.0585
36.9961
43.6736
81.3091
3111529831794100363
8.8537
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
40.0511
70.7317
27.9343
65.1961
11648119307306
99.6743
anovak-vgINDELI6_15HG002complexvarhet
40.0214
28.2378
68.6825
52.4803
6651690954435281
64.5977
anovak-vgINDELI6_15map_l250_m2_e0het
40.0000
40.0000
40.0000
96.4286
23231
33.3333
anovak-vgINDELI6_15map_l250_m2_e1het
40.0000
40.0000
40.0000
96.5517
23231
33.3333
anovak-vgINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
40.0000
40.0000
40.0000
99.5421
23232
66.6667