PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49451-49500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 99.7487 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 99.7537 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m1_e0 | * | 42.8571 | 27.2727 | 100.0000 | 88.4615 | 3 | 8 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 89.2857 | 3 | 8 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l150_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 89.2857 | 3 | 8 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.8571 | 30.0000 | 75.0000 | 98.2143 | 3 | 7 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 42.8571 | 37.5000 | 50.0000 | 25.0000 | 3 | 5 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.8527 | 36.9227 | 51.0519 | 66.2725 | 1471 | 2513 | 1456 | 1396 | 1253 | 89.7564 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 42.8116 | 28.1132 | 89.7196 | 42.4731 | 149 | 381 | 96 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.8058 | 31.8436 | 65.2778 | 41.9355 | 57 | 122 | 47 | 25 | 3 | 12.0000 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | hetalt | 42.7960 | 27.4218 | 97.4089 | 29.0841 | 2341 | 6196 | 2406 | 64 | 63 | 98.4375 | |
| ciseli-custom | INDEL | I6_15 | segdup | homalt | 42.7935 | 38.2979 | 48.4848 | 89.2157 | 18 | 29 | 16 | 17 | 16 | 94.1176 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 42.7693 | 45.3355 | 40.4781 | 43.2897 | 277 | 334 | 508 | 747 | 649 | 86.8809 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7673 | 28.5714 | 85.0000 | 56.5217 | 10 | 25 | 17 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | * | 42.7650 | 28.1553 | 88.8889 | 96.7332 | 29 | 74 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7574 | 27.8075 | 92.4731 | 71.5596 | 104 | 270 | 86 | 7 | 2 | 28.5714 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | het | 42.7481 | 27.3585 | 97.7136 | 79.5371 | 812 | 2156 | 812 | 19 | 1 | 5.2632 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 42.7404 | 30.1771 | 73.2258 | 61.7378 | 1176 | 2721 | 1135 | 415 | 63 | 15.1807 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | het | 42.7242 | 27.1911 | 99.6507 | 95.4527 | 1998 | 5350 | 1997 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 42.7044 | 39.5869 | 46.3548 | 67.9809 | 1610 | 2457 | 1615 | 1869 | 1855 | 99.2509 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 42.6981 | 81.4626 | 28.9311 | 78.7122 | 1437 | 327 | 1494 | 3670 | 76 | 2.0708 | |
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | homalt | 42.6708 | 92.4399 | 27.7372 | 69.2234 | 269 | 22 | 266 | 693 | 591 | 85.2814 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 42.6673 | 30.3609 | 71.7500 | 71.1191 | 286 | 656 | 287 | 113 | 96 | 84.9558 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 42.6554 | 78.6458 | 29.2636 | 46.1940 | 151 | 41 | 151 | 365 | 351 | 96.1644 | |
| eyeh-varpipe | INDEL | I6_15 | * | hetalt | 42.6506 | 27.4354 | 95.7540 | 48.5714 | 2346 | 6205 | 2413 | 107 | 106 | 99.0654 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | * | 42.6472 | 30.2857 | 72.0588 | 94.2761 | 53 | 122 | 49 | 19 | 2 | 10.5263 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 42.6230 | 100.0000 | 27.0833 | 34.2466 | 13 | 0 | 13 | 35 | 31 | 88.5714 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | het | 42.6230 | 27.6596 | 92.8571 | 96.3542 | 13 | 34 | 13 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 42.6022 | 32.6316 | 61.3466 | 68.7695 | 217 | 448 | 246 | 155 | 138 | 89.0323 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.5806 | 29.7297 | 75.0000 | 50.4762 | 44 | 104 | 39 | 13 | 10 | 76.9231 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.5532 | 100.0000 | 27.0270 | 90.7500 | 6 | 0 | 10 | 27 | 1 | 3.7037 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 42.5532 | 30.3030 | 71.4286 | 87.1560 | 10 | 23 | 10 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | het | 42.5209 | 27.0270 | 99.6439 | 95.4728 | 1960 | 5292 | 1959 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 42.4936 | 32.3575 | 61.8768 | 70.3993 | 210 | 439 | 211 | 130 | 89 | 68.4615 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.4890 | 35.9504 | 51.9347 | 63.3123 | 348 | 620 | 604 | 559 | 103 | 18.4258 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | het | 42.4790 | 26.9846 | 99.7608 | 94.8360 | 3338 | 9032 | 3336 | 8 | 4 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 42.4779 | 27.5862 | 92.3077 | 89.5161 | 24 | 63 | 24 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 42.4779 | 75.0000 | 29.6296 | 79.2308 | 3 | 1 | 8 | 19 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 42.4438 | 56.8627 | 33.8583 | 68.1704 | 87 | 66 | 86 | 168 | 147 | 87.5000 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.4373 | 41.1000 | 43.8645 | 68.7909 | 4140 | 5933 | 4118 | 5270 | 4818 | 91.4231 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 42.4242 | 26.9231 | 100.0000 | 92.4731 | 7 | 19 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | * | 42.4242 | 29.1667 | 77.7778 | 95.4315 | 7 | 17 | 7 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 42.4175 | 33.3041 | 58.3975 | 75.7745 | 380 | 761 | 379 | 270 | 267 | 98.8889 | |