PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49251-49300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | HG002complexvar | homalt | 44.7304 | 49.8270 | 40.5797 | 45.3249 | 144 | 145 | 140 | 205 | 205 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002compoundhet | het | 44.7280 | 80.2570 | 31.0032 | 43.1484 | 687 | 169 | 683 | 1520 | 1507 | 99.1447 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.6809 | 30.0000 | 87.5000 | 57.8947 | 6 | 14 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.6735 | 50.6428 | 39.9631 | 53.8471 | 1103 | 1075 | 3030 | 4552 | 3067 | 67.3770 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | het | 44.6377 | 34.4262 | 63.4615 | 83.5962 | 21 | 40 | 33 | 19 | 5 | 26.3158 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | * | 44.6205 | 43.3845 | 45.9289 | 60.1662 | 12998 | 16962 | 12816 | 15088 | 14950 | 99.0854 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 44.6151 | 28.9256 | 97.5000 | 59.5960 | 105 | 258 | 117 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.5986 | 69.2308 | 32.8947 | 40.6250 | 9 | 4 | 25 | 51 | 46 | 90.1961 | |
| ckim-vqsr | SNP | tv | map_l125_m2_e0 | homalt | 44.5965 | 28.7020 | 99.9421 | 88.0225 | 1727 | 4290 | 1727 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 44.5932 | 32.0350 | 73.3458 | 78.2195 | 1793 | 3804 | 1563 | 568 | 142 | 25.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.5283 | 92.9134 | 29.2804 | 23.5294 | 118 | 9 | 118 | 285 | 276 | 96.8421 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 44.5054 | 31.6677 | 74.8476 | 75.2826 | 488 | 1053 | 491 | 165 | 135 | 81.8182 | |
| anovak-vg | INDEL | I1_5 | HG002complexvar | het | 44.4856 | 30.2381 | 84.1220 | 66.7223 | 5500 | 12689 | 6204 | 1171 | 683 | 58.3262 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 44.4716 | 32.8160 | 68.9674 | 74.6267 | 1459 | 2987 | 1289 | 580 | 148 | 25.5172 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 44.4700 | 32.0066 | 72.8302 | 65.6291 | 193 | 410 | 193 | 72 | 61 | 84.7222 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 44.4518 | 41.8244 | 47.4313 | 70.0067 | 1701 | 2366 | 1708 | 1893 | 1866 | 98.5737 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | het | 44.4444 | 33.3333 | 66.6667 | 96.7213 | 13 | 26 | 8 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.3392 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 99.4175 | 3 | 6 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 86.9565 | 2 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 88.0000 | 2 | 5 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 44.4444 | 50.0000 | 40.0000 | 97.7169 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | het | 44.4444 | 28.5714 | 100.0000 | 60.0000 | 2 | 5 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 44.4444 | 66.6667 | 33.3333 | 73.9130 | 4 | 2 | 4 | 8 | 3 | 37.5000 | |
| ckim-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.5490 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l250_m1_e0 | * | 44.4444 | 50.0000 | 40.0000 | 98.5549 | 2 | 2 | 2 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5327 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I16_PLUS | func_cds | * | 44.4444 | 33.3333 | 66.6667 | 50.0000 | 4 | 8 | 4 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m0_e0 | * | 44.4444 | 33.3333 | 66.6667 | 99.0244 | 2 | 4 | 4 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 44.4444 | 50.0000 | 40.0000 | 88.6364 | 1 | 1 | 2 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.5490 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 90.4762 | 2 | 5 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 44.4444 | 100.0000 | 28.5714 | 72.0000 | 8 | 0 | 8 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | hetalt | 44.4444 | 28.5714 | 100.0000 | 93.0147 | 14 | 35 | 19 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 78.5714 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 82.3529 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 50.0000 | 40.0000 | 96.7213 | 5 | 5 | 4 | 6 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5759 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 98.0198 | 2 | 5 | 2 | 0 | 0 | ||