PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.5915 | 75.0000 | 40.4930 | 99.8509 | 93 | 31 | 115 | 169 | 4 | 2.3669 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 52.5642 | 54.2299 | 50.9978 | 81.1743 | 500 | 422 | 690 | 663 | 17 | 2.5641 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 52.5373 | 61.5385 | 45.8333 | 82.9384 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 52.5373 | 61.5385 | 45.8333 | 83.1382 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 52.5108 | 77.0492 | 39.8268 | 78.2486 | 47 | 14 | 92 | 139 | 4 | 2.8777 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | het | 52.5060 | 52.6316 | 52.3810 | 94.1176 | 10 | 9 | 11 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 52.4956 | 98.0106 | 35.8482 | 76.1642 | 2956 | 60 | 3022 | 5408 | 61 | 1.1280 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | het | 52.4874 | 55.7243 | 49.6058 | 30.8102 | 477 | 379 | 2580 | 2621 | 1862 | 71.0416 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.4859 | 43.1507 | 66.9753 | 66.7692 | 378 | 498 | 434 | 214 | 200 | 93.4579 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | het | 52.4590 | 54.2373 | 50.7937 | 72.0000 | 32 | 27 | 32 | 31 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.4550 | 86.9565 | 37.5546 | 88.1756 | 240 | 36 | 258 | 429 | 7 | 1.6317 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | hetalt | 52.4540 | 35.9293 | 97.1234 | 60.7545 | 9047 | 16133 | 10973 | 325 | 315 | 96.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.4345 | 36.8421 | 90.9091 | 71.0526 | 7 | 12 | 10 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.4343 | 64.2857 | 44.2724 | 31.6918 | 477 | 265 | 2002 | 2520 | 2292 | 90.9524 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 52.3943 | 37.9325 | 84.6777 | 63.9143 | 5229 | 8556 | 5018 | 908 | 475 | 52.3128 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 87.6404 | 11 | 20 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 52.3810 | 36.6667 | 91.6667 | 78.9474 | 11 | 19 | 11 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 73.6842 | 11 | 20 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 52.3810 | 68.7500 | 42.3077 | 90.1515 | 11 | 5 | 11 | 15 | 12 | 80.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | homalt | 52.3802 | 35.4870 | 99.9697 | 82.0942 | 3301 | 6001 | 3301 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 52.3636 | 90.0000 | 36.9231 | 94.2376 | 18 | 2 | 24 | 41 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_siren | * | 52.3607 | 48.1967 | 57.3123 | 74.7000 | 147 | 158 | 145 | 108 | 71 | 65.7407 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002complexvar | * | 52.3530 | 38.8846 | 80.0955 | 45.7686 | 509 | 800 | 503 | 125 | 124 | 99.2000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | * | 52.3097 | 37.7919 | 84.9392 | 57.8951 | 4823 | 7939 | 4822 | 855 | 764 | 89.3567 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | * | 52.2963 | 39.2666 | 78.2675 | 62.9505 | 514 | 795 | 515 | 143 | 46 | 32.1678 | |
| gduggal-bwafb | INDEL | I1_5 | HG002compoundhet | homalt | 52.2901 | 97.8723 | 35.6751 | 79.4310 | 322 | 7 | 325 | 586 | 578 | 98.6348 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | * | 52.2205 | 37.9310 | 83.7838 | 88.2166 | 33 | 54 | 31 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 52.2084 | 35.8340 | 96.1392 | 47.0737 | 1710 | 3062 | 2017 | 81 | 81 | 100.0000 | |
| eyeh-varpipe | INDEL | * | * | hetalt | 52.2077 | 35.9353 | 95.4130 | 76.9125 | 9069 | 16168 | 11066 | 532 | 505 | 94.9248 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 52.1835 | 44.7148 | 62.6476 | 54.5878 | 2720 | 3363 | 3237 | 1930 | 985 | 51.0363 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.1766 | 96.2264 | 35.7920 | 50.1344 | 3723 | 146 | 3717 | 6668 | 6640 | 99.5801 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 52.1739 | 40.0000 | 75.0000 | 63.6364 | 6 | 9 | 9 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 52.1739 | 40.0000 | 75.0000 | 96.4602 | 2 | 3 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 52.1739 | 42.8571 | 66.6667 | 97.6654 | 3 | 4 | 8 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 52.1739 | 35.2941 | 100.0000 | 94.3662 | 12 | 22 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 52.1739 | 40.0000 | 75.0000 | 99.2395 | 4 | 6 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 52.1726 | 37.5740 | 85.3233 | 64.3826 | 4315 | 7169 | 4302 | 740 | 648 | 87.5676 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | homalt | 52.1579 | 35.2833 | 99.9692 | 82.1867 | 3251 | 5963 | 3251 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 52.1569 | 63.6364 | 44.1860 | 82.8000 | 42 | 24 | 38 | 48 | 24 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 52.1457 | 98.9446 | 35.4015 | 37.2279 | 375 | 4 | 388 | 708 | 669 | 94.4915 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.1262 | 44.7059 | 62.5000 | 60.0000 | 38 | 47 | 20 | 12 | 9 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.1197 | 61.4379 | 45.2558 | 24.9536 | 94 | 59 | 1097 | 1327 | 1322 | 99.6232 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |