PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47951-48000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 53.5399 | 39.1005 | 84.8881 | 55.0336 | 1817 | 2830 | 1820 | 324 | 282 | 87.0370 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 53.5373 | 50.9091 | 56.4516 | 88.7681 | 140 | 135 | 140 | 108 | 64 | 59.2593 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 53.5363 | 39.1660 | 84.5632 | 59.4976 | 1869 | 2903 | 1868 | 341 | 287 | 84.1642 | |
| gduggal-snapplat | INDEL | D1_5 | HG002complexvar | hetalt | 53.4943 | 40.5325 | 78.6432 | 87.0210 | 548 | 804 | 626 | 170 | 133 | 78.2353 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | homalt | 53.4856 | 42.2526 | 72.8541 | 73.1257 | 679 | 928 | 679 | 253 | 229 | 90.5138 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | * | 53.4759 | 49.1379 | 58.6538 | 81.9130 | 57 | 59 | 61 | 43 | 25 | 58.1395 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4601 | 48.8889 | 58.9744 | 33.8983 | 22 | 23 | 23 | 16 | 16 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.4542 | 96.4142 | 36.9777 | 47.8842 | 2635 | 98 | 2655 | 4525 | 4487 | 99.1602 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 53.4400 | 37.6975 | 91.7582 | 47.5504 | 167 | 276 | 167 | 15 | 13 | 86.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.4225 | 56.2232 | 50.8876 | 80.9255 | 131 | 102 | 86 | 83 | 33 | 39.7590 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 53.4223 | 89.0717 | 38.1524 | 44.9605 | 2111 | 259 | 2098 | 3401 | 3202 | 94.1488 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.4023 | 37.0119 | 95.8478 | 69.3856 | 436 | 742 | 554 | 24 | 22 | 91.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.3937 | 39.8649 | 80.8219 | 88.1107 | 59 | 89 | 59 | 14 | 7 | 50.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 53.3873 | 61.5385 | 47.1429 | 81.9588 | 16 | 10 | 33 | 37 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 53.3749 | 90.5160 | 37.8458 | 56.6360 | 649 | 68 | 643 | 1056 | 1003 | 94.9811 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m0_e0 | * | 53.3333 | 36.3636 | 100.0000 | 83.3333 | 4 | 7 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 50.0000 | 57.1429 | 61.1111 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m0_e0 | het | 53.3333 | 100.0000 | 36.3636 | 94.5545 | 4 | 0 | 4 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 53.3333 | 50.0000 | 57.1429 | 99.4104 | 3 | 3 | 12 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 67.8049 | 24 | 0 | 24 | 42 | 42 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m0_e0 | * | 53.3333 | 36.3636 | 100.0000 | 94.2857 | 12 | 21 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.0000 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.1579 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 92.0455 | 4 | 4 | 4 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | het | 53.3333 | 57.1429 | 50.0000 | 91.0112 | 4 | 3 | 4 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 74.1176 | 8 | 0 | 8 | 14 | 14 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 98.8235 | 4 | 5 | 4 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.6825 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 96.8037 | 4 | 4 | 4 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.3333 | 92.3077 | 37.5000 | 79.6178 | 12 | 1 | 12 | 20 | 1 | 5.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 53.3229 | 48.2739 | 59.5513 | 59.8591 | 7761 | 8316 | 10724 | 7284 | 5656 | 77.6496 | |