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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 954 955 956 957 958 959 960 961 962 ... 1720 1721 » 47851-47900 / 86044 show all
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	54.3836	87.5000	39.4521	89.5744	133	19	144	221	4	1.8100
mlin-fermikit	SNP	ti	map_l250_m2_e0	homalt	54.3759	43.3391	72.9548	76.3218	758	991	758	281	257	91.4591
ciseli-custom	INDEL	D6_15	map_l100_m2_e0	*	54.3651	51.8939	57.0833	88.8786	137	127	137	103	60	58.2524
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	54.3642	39.0110	89.6450	28.3898	923	1443	303	35	34	97.1429
gduggal-bwaplat	SNP	tv	map_l125_m0_e0	homalt	54.3607	37.3255	100.0000	86.5727	829	1392	829	0	0
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt	54.3418	37.6000	97.9592	37.9747	47	78	48	1	1	100.0000
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	54.3279	87.8989	39.3131	46.3121	2782	383	2770	4276	4018	93.9663
anovak-vg	INDEL	I16_PLUS	HG002complexvar	homalt	54.3276	66.0194	46.1538	39.2523	204	105	210	245	216	88.1633
gduggal-snapvard	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	54.3265	100.0000	37.2933	91.2179	3	0	857	1441	188	13.0465
gduggal-snapfb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	54.3229	97.9257	37.5868	83.5805	4060	86	4112	6828	99	1.4499
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	54.3121	49.8996	59.5807	47.5940	21624	21711	28700	19470	15099	77.5501
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	54.3046	38.5882	91.6201	62.7471	328	522	328	30	21	70.0000
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	54.2839	89.8551	38.8889	90.3514	62	7	63	99	24	24.2424
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	54.2811	37.8378	96.0000	79.1667	28	46	24	1	1	100.0000
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	54.2716	87.3611	39.3624	86.5975	629	91	605	932	37	3.9700
ciseli-custom	INDEL	D16_PLUS	map_l100_m2_e0	het	54.2636	41.6667	77.7778	88.6076	20	28	21	6	3	50.0000
anovak-vg	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	54.2561	49.7820	59.6139	54.7156	1941	1958	3057	2071	1674	80.8305
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	54.2480	71.5164	43.6969	32.3548	349	139	1903	2452	2341	95.4731
gduggal-bwaplat	SNP	*	map_l250_m2_e1	*	54.2324	37.2605	99.5985	97.3745	2976	5011	2977	12	3	25.0000
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	54.2254	39.2857	87.5000	57.8947	11	17	7	1	1	100.0000
ciseli-custom	INDEL	I1_5	map_l100_m2_e0	homalt	54.2174	40.3013	82.8125	83.8994	214	317	212	44	35	79.5455
qzeng-custom	INDEL	I16_PLUS	map_l100_m1_e0	het	54.2158	72.2222	43.3962	80.2974	13	5	23	30	0	0.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	54.2142	52.8090	55.6962	76.4881	94	84	88	70	43	61.4286
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	54.1881	37.8431	95.3871	85.0345	579	951	579	28	21	75.0000
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	54.1881	37.8431	95.3871	85.0345	579	951	579	28	21	75.0000
anovak-vg	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	54.1762	50.3884	58.5798	35.8416	10378	10218	11153	7886	6105	77.4157
ciseli-custom	INDEL	I1_5	map_l100_m1_e0	homalt	54.1379	40.1544	83.0645	82.5475	208	310	206	42	33	78.5714
gduggal-bwafb	INDEL	I16_PLUS	map_siren	*	54.1375	38.3721	91.8919	72.3881	33	53	34	3	3	100.0000
qzeng-custom	INDEL	D16_PLUS	map_l125_m1_e0	het	54.1353	90.0000	38.7097	94.2056	18	2	24	38	0	0.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	54.1353	37.1134	100.0000	32.0755	36	61	36	0	0
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	54.1272	40.3636	82.1340	57.9332	333	492	331	72	71	98.6111
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	54.1237	72.0257	43.3492	26.9375	224	87	1271	1661	1654	99.5786
mlin-fermikit	SNP	*	map_l150_m1_e0	het	54.1179	37.3680	98.0827	65.3701	7218	12098	7213	141	5	3.5461
gduggal-bwavard	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	54.1148	85.3960	39.6066	69.0608	3450	590	3443	5250	4800	91.4286
ciseli-custom	INDEL	D6_15	map_l150_m2_e0	*	54.0881	52.4390	55.8442	94.0769	43	39	43	34	16	47.0588
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	54.0864	41.3442	78.1818	30.8176	203	288	86	24	6	25.0000
gduggal-bwaplat	SNP	*	map_l250_m2_e0	*	54.0835	37.1211	99.5918	97.3661	2927	4958	2928	12	3	25.0000
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	54.0780	37.2951	98.3240	67.3953	182	306	176	3	3	100.0000
gduggal-bwaplat	SNP	tv	map_l250_m2_e0	het	54.0541	37.1134	99.4475	98.0089	720	1220	720	4	1	25.0000
gduggal-bwavard	INDEL	D16_PLUS	map_l100_m1_e0	*	54.0541	57.4713	51.0204	92.8363	50	37	50	48	21	43.7500
anovak-vg	INDEL	I6_15	map_l100_m1_e0	*	54.0541	50.0000	58.8235	80.7547	57	57	60	42	24	57.1429
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	54.0541	83.3333	40.0000	98.5795	5	1	8	12	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	54.0473	88.5714	38.8889	81.0526	31	4	21	33	10	30.3030
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	54.0397	38.7097	89.4737	72.4638	108	171	34	4	4	100.0000
anovak-vg	INDEL	D1_5	HG002compoundhet	het	54.0229	57.5810	50.8790	62.2806	995	733	4428	4275	2764	64.6550
gduggal-bwaplat	SNP	ti	map_l250_m1_e0	*	54.0102	37.0605	99.5311	97.1343	1697	2882	1698	8	2	25.0000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	54.0093	51.1111	57.2559	47.5069	69	66	217	162	144	88.8889
ckim-isaac	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	54.0000	38.0282	93.1034	47.2727	27	44	27	2	2	100.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	53.9976	85.3746	39.4857	56.3279	4991	855	5021	7695	7654	99.4672

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