PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47651-47700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 55.7377 | 70.8333 | 45.9459 | 88.1029 | 17 | 7 | 17 | 20 | 19 | 95.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 55.7305 | 44.0570 | 75.8202 | 34.2652 | 1731 | 2198 | 1872 | 597 | 591 | 98.9950 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.7276 | 58.8235 | 52.9412 | 95.5959 | 10 | 7 | 9 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.6919 | 47.1555 | 68.0020 | 66.7689 | 15086 | 16906 | 17977 | 8459 | 3479 | 41.1278 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.6896 | 75.0355 | 44.2746 | 57.4199 | 1058 | 352 | 2664 | 3353 | 2340 | 69.7882 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.6802 | 53.5032 | 58.0420 | 68.9130 | 84 | 73 | 83 | 60 | 52 | 86.6667 | |
| anovak-vg | INDEL | I16_PLUS | * | homalt | 55.6761 | 71.2364 | 45.6948 | 36.9604 | 1112 | 449 | 1141 | 1356 | 1055 | 77.8024 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 55.6515 | 48.6166 | 65.0667 | 91.6126 | 246 | 260 | 244 | 131 | 111 | 84.7328 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | het | 55.6456 | 71.4286 | 45.5752 | 82.8658 | 5 | 2 | 103 | 123 | 15 | 12.1951 | |
| gduggal-snapplat | INDEL | * | segdup | hetalt | 55.6430 | 40.0000 | 91.3793 | 97.9993 | 52 | 78 | 53 | 5 | 1 | 20.0000 | |
| anovak-vg | INDEL | * | tech_badpromoters | het | 55.6267 | 41.0256 | 86.3636 | 38.8889 | 16 | 23 | 19 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | hetalt | 55.6197 | 42.0046 | 82.2940 | 85.5161 | 725 | 1001 | 739 | 159 | 112 | 70.4403 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | het | 55.6184 | 84.9383 | 41.3462 | 47.6949 | 344 | 61 | 258 | 366 | 363 | 99.1803 | |
| gduggal-bwaplat | INDEL | I16_PLUS | * | het | 55.5939 | 38.8521 | 97.6895 | 77.4865 | 1056 | 1662 | 1057 | 25 | 13 | 52.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m2_e0 | homalt | 55.5756 | 38.4849 | 99.9718 | 81.4225 | 3546 | 5668 | 3546 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | het | 55.5672 | 38.7672 | 98.0639 | 69.9736 | 7805 | 12328 | 7800 | 154 | 5 | 3.2468 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 55.5615 | 38.9075 | 97.1429 | 49.6732 | 349 | 548 | 374 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 93.8053 | 10 | 16 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | HG002complexvar | * | 55.5556 | 100.0000 | 38.4615 | 87.1287 | 4 | 0 | 10 | 16 | 4 | 25.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.9286 | 10 | 16 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 55.5556 | 38.4615 | 100.0000 | 83.3333 | 10 | 16 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_siren | homalt | 55.5556 | 38.8889 | 97.2222 | 80.4348 | 35 | 55 | 35 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5556 | 100.0000 | 38.4615 | 92.6554 | 6 | 0 | 5 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 98.9691 | 5 | 8 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 55.5556 | 38.4615 | 100.0000 | 91.4530 | 10 | 16 | 10 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | * | 55.5556 | 66.6667 | 47.6190 | 92.3913 | 10 | 5 | 10 | 11 | 4 | 36.3636 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 55.5556 | 40.0000 | 90.9091 | 92.7869 | 20 | 30 | 20 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 55.5556 | 55.5556 | 55.5556 | 87.3239 | 5 | 4 | 5 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 55.5323 | 39.1709 | 95.3662 | 55.2807 | 463 | 719 | 638 | 31 | 30 | 96.7742 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 55.4931 | 52.6341 | 58.6805 | 53.0447 | 22809 | 20526 | 37552 | 26442 | 22338 | 84.4792 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 55.4705 | 58.8889 | 52.4272 | 93.3117 | 53 | 37 | 54 | 49 | 21 | 42.8571 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.4366 | 50.8272 | 60.9654 | 44.0200 | 1874 | 1813 | 2046 | 1310 | 988 | 75.4198 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 55.4286 | 49.6853 | 62.6733 | 53.8178 | 7973 | 8074 | 8093 | 4820 | 3647 | 75.6639 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | het | 55.4141 | 38.4227 | 99.3482 | 97.7302 | 1827 | 2928 | 1829 | 12 | 3 | 25.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 55.4070 | 49.8753 | 62.3188 | 47.9245 | 200 | 201 | 258 | 156 | 121 | 77.5641 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.4033 | 40.0000 | 90.0990 | 78.7815 | 92 | 138 | 91 | 10 | 9 | 90.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 55.3614 | 47.3958 | 66.5455 | 70.9916 | 182 | 202 | 183 | 92 | 89 | 96.7391 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.3485 | 41.4226 | 83.3803 | 72.9627 | 297 | 420 | 296 | 59 | 57 | 96.6102 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 55.3475 | 87.7323 | 40.4253 | 50.7774 | 3304 | 462 | 3289 | 4847 | 4536 | 93.5837 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 55.3475 | 87.7323 | 40.4253 | 50.7774 | 3304 | 462 | 3289 | 4847 | 4536 | 93.5837 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l100_m1_e0 | * | 55.3459 | 38.5965 | 97.7778 | 90.5462 | 44 | 70 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 55.3143 | 76.7267 | 43.2455 | 81.7971 | 511 | 155 | 509 | 668 | 383 | 57.3353 | |