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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 937 938 939 940 941 942 943 944 945 ... 1720 1721 » 47001-47050 / 86044 show all
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.4059	50.8475	71.4286	81.4978	30	29	30	12	12	100.0000
gduggal-snapvard	INDEL	D6_15	map_l125_m1_e0	homalt	59.4059	44.1176	90.9091	79.0476	15	19	20	2	2	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	59.4059	43.6893	92.7835	59.2437	90	116	90	7	7	100.0000
ckim-vqsr	SNP	*	map_l250_m2_e1	*	59.3854	42.5817	98.0963	97.1254	3401	4586	3401	66	0	0.0000
ciseli-custom	INDEL	D6_15	map_l100_m2_e0	homalt	59.3789	75.3846	48.9796	85.4599	49	16	48	50	47	94.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	59.3672	76.6667	48.4375	84.0000	46	14	31	33	11	33.3333
ciseli-custom	INDEL	I1_5	map_l150_m0_e0	het	59.3607	61.3208	57.5221	94.3500	65	41	65	48	38	79.1667
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.3452	47.5410	78.9474	87.6623	29	32	30	8	7	87.5000
eyeh-varpipe	INDEL	D16_PLUS	*	*	59.3408	53.1250	67.2039	51.2916	3604	3180	3586	1750	1709	97.6571
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	59.3370	47.9747	77.7515	66.6856	5697	6178	8230	2355	819	34.7771
mlin-fermikit	INDEL	I1_5	map_l150_m2_e0	het	59.3258	42.7184	97.0588	85.5779	132	177	132	4	2	50.0000
ckim-isaac	SNP	*	map_l250_m2_e1	homalt	59.3225	42.2001	99.8259	85.8515	1147	1571	1147	2	2	100.0000
gduggal-bwaplat	INDEL	D1_5	map_l250_m2_e0	het	59.3023	42.1488	100.0000	98.9699	51	70	51	0	0
anovak-vg	INDEL	I1_5	map_l125_m1_e0	*	59.3006	61.3253	57.4054	86.4983	509	321	531	394	267	67.7665
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.2949	45.8221	83.9901	84.3906	340	402	341	65	1	1.5385
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	59.2765	78.1250	47.7551	84.1321	125	35	117	128	89	69.5312
gduggal-bwaplat	INDEL	D16_PLUS	map_l100_m0_e0	het	59.2593	42.1053	100.0000	98.1043	8	11	8	0	0
jli-custom	INDEL	D16_PLUS	HG002compoundhet	homalt	59.2593	100.0000	42.1053	67.7966	8	0	8	11	11	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m1_e0	homalt	59.2593	53.3333	66.6667	87.7551	8	7	8	4	4	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m2_e0	homalt	59.2593	53.3333	66.6667	89.1892	8	7	8	4	4	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m2_e1	homalt	59.2593	53.3333	66.6667	89.7436	8	7	8	4	4	100.0000
qzeng-custom	INDEL	I6_15	map_l150_m1_e0	het	59.2593	53.3333	66.6667	95.0549	8	7	18	9	2	22.2222
qzeng-custom	INDEL	I6_15	map_l150_m2_e0	het	59.2593	53.3333	66.6667	95.4925	8	7	18	9	2	22.2222
ciseli-custom	INDEL	D16_PLUS	map_l150_m2_e1	*	59.2593	44.4444	88.8889	96.0352	8	10	8	1	1	100.0000
ciseli-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	59.2593	66.6667	53.3333	64.0000	24	12	24	21	20	95.2381
gduggal-snapvard	INDEL	D1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	59.2593	72.7273	50.0000	99.8444	8	3	2	2	2	100.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m1_e0	*	59.2593	53.3333	66.6667	87.5000	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m2_e0	*	59.2593	53.3333	66.6667	88.9908	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I16_PLUS	map_l125_m2_e1	*	59.2593	53.3333	66.6667	89.0909	8	7	8	4	3	75.0000
ghariani-varprowl	INDEL	I6_15	map_l125_m0_e0	*	59.2593	53.3333	66.6667	95.5720	8	7	8	4	3	75.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	59.2431	51.8849	69.0334	76.6255	16296	15112	21147	9486	4195	44.2231
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	59.2431	51.8849	69.0334	76.6255	16296	15112	21147	9486	4195	44.2231
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.2422	42.8650	95.8708	51.4971	2331	3107	2345	101	90	89.1089
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	59.2384	57.6923	60.8696	95.4092	15	11	14	9	5	55.5556
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.2248	49.9739	72.6787	68.3719	5739	5745	7342	2760	1993	72.2101
gduggal-bwavard	INDEL	D16_PLUS	map_siren	*	59.2100	61.5385	57.0513	92.6450	88	55	89	67	35	52.2388
ckim-vqsr	SNP	*	map_l250_m2_e0	*	59.1976	42.3843	98.1210	97.1166	3342	4543	3342	64	0	0.0000
ckim-isaac	SNP	*	map_l250_m2_e0	homalt	59.1933	42.0700	99.8233	85.8571	1130	1556	1130	2	2	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	59.1835	45.3355	85.2120	34.7503	277	334	824	143	142	99.3007
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	59.1795	86.4865	44.9782	68.8011	128	20	103	126	124	98.4127
gduggal-snapvard	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	59.1721	54.4401	64.8052	53.7673	8736	7311	8947	4859	4228	87.0138
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m1_e0	*	59.1682	52.8736	67.1642	96.2232	46	41	45	22	19	86.3636
eyeh-varpipe	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	59.1529	51.0315	70.3486	60.3619	940	902	1433	604	512	84.7682
ciseli-custom	SNP	tv	map_l250_m0_e0	het	59.1512	52.9720	66.9623	96.1499	303	269	302	149	7	4.6980
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.1477	49.1961	74.1463	60.0390	153	158	152	53	53	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	59.1474	45.9330	83.0357	59.5668	96	113	93	19	17	89.4737
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	59.1341	47.0588	79.5455	96.0644	32	36	35	9	9	100.0000
mlin-fermikit	INDEL	D16_PLUS	map_l100_m2_e0	*	59.1325	64.4444	54.6296	93.1904	58	32	59	49	15	30.6122
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.1321	46.1872	82.1586	80.3718	745	868	746	162	24	14.8148
ciseli-custom	INDEL	I1_5	map_l125_m2_e0	*	59.1149	52.9755	66.8639	88.9180	454	403	452	224	193	86.1607

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