PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 936 937 938 939 940 941 942 943 944 ... 1720 1721 » 46951-47000 / 86044 show all
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	59.6441	58.6663	60.6552	76.8269	38339	27012	38291	24838	23765	95.6800
ghariani-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	59.6441	58.6663	60.6552	76.8269	38339	27012	38291	24838	23765	95.6800
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	hetalt	59.6413	42.4920	100.0000	90.0000	532	720	1	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	59.6364	59.0060	60.2804	68.5856	4357	3027	6148	4051	1556	38.4103
jpowers-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	59.6174	68.6837	52.6656	65.6874	647	295	652	586	580	98.9761
mlin-fermikit	SNP	*	map_l100_m0_e0	*	59.6148	45.9548	84.8308	53.4081	15092	17749	15088	2698	2419	89.6590
gduggal-bwaplat	SNP	ti	map_l250_m2_e0	het	59.6085	42.5630	99.4265	97.5359	1385	1869	1387	8	2	25.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	59.5931	46.9320	81.6092	83.6389	283	320	284	64	1	1.5625
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	59.5875	61.0924	58.1549	41.9454	3624	2308	5623	4046	3831	94.6861
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	59.5825	43.7326	93.4524	71.9533	157	202	157	11	10	90.9091
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	59.5793	42.8121	97.9353	47.2358	1629	2176	3178	67	62	92.5373
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	59.5761	58.3242	60.8829	60.3781	21342	15250	21309	13691	13201	96.4210
ciseli-custom	INDEL	*	map_l250_m2_e0	homalt	59.5745	48.6957	76.7123	96.9159	56	59	56	17	11	64.7059
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	het	59.5745	50.0000	73.6842	74.3243	25	25	28	10	7	70.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	59.5745	66.6667	53.8462	93.8095	4	2	7	6	6	100.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.5731	42.4788	99.6904	42.1147	401	543	322	1	1	100.0000
ciseli-custom	SNP	tv	map_l250_m1_e0	het	59.5668	53.4415	67.2779	93.2143	955	832	954	464	21	4.5259
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.5561	42.5651	99.1245	51.1308	1603	2163	1585	14	12	85.7143
gduggal-snapvard	INDEL	I6_15	map_siren	*	59.5493	55.7377	63.9205	78.6148	170	135	225	127	95	74.8031
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.5457	53.6378	66.9161	58.0784	2020	1746	2146	1061	754	71.0650
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.5457	53.6378	66.9161	58.0784	2020	1746	2146	1061	754	71.0650
ckim-vqsr	SNP	ti	map_l250_m2_e0	*	59.5430	42.6717	98.4793	97.0358	2137	2871	2137	33	0	0.0000
mlin-fermikit	SNP	tv	map_l150_m1_e0	homalt	59.5283	52.1287	69.3761	55.9108	2057	1889	2057	908	841	92.6211
gduggal-snapfb	INDEL	*	map_l100_m2_e1	hetalt	59.5248	47.7273	79.0698	93.2917	63	69	34	9	5	55.5556
mlin-fermikit	INDEL	I1_5	map_l150_m2_e1	het	59.5186	42.9022	97.1429	85.6704	136	181	136	4	2	50.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	59.5098	45.1054	87.4307	85.0479	4193	5103	4257	612	532	86.9281
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	59.5041	44.4444	90.0000	83.0508	4	5	9	1	1	100.0000
ghariani-varprowl	INDEL	I16_PLUS	map_siren	*	59.4937	54.6512	65.2778	81.5385	47	39	47	25	24	96.0000
ciseli-custom	INDEL	I1_5	map_l125_m2_e1	*	59.4882	53.3333	67.2489	88.9869	464	406	462	225	194	86.2222
anovak-vg	INDEL	I1_5	map_l125_m2_e0	*	59.4733	61.3769	57.6842	87.5801	526	331	548	402	273	67.9104
gduggal-snapfb	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.4713	60.2535	58.7091	58.8203	1331	878	1328	934	788	84.3683
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	59.4656	87.5000	45.0363	57.4665	175	25	186	227	205	90.3084
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
ckim-isaac	INDEL	D6_15	map_l125_m2_e1	*	59.4595	42.9688	96.4912	90.9236	55	73	55	2	2	100.0000
ckim-isaac	INDEL	D6_15	map_l150_m1_e0	homalt	59.4595	42.3077	100.0000	77.5510	11	15	11	0	0
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	59.4595	59.4595	59.4595	84.3882	22	15	22	15	6	40.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	59.4595	45.8333	84.6154	35.0000	11	13	11	2	2	100.0000
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	59.4595	73.3333	50.0000	96.4630	11	4	11	11	7	63.6364
qzeng-custom	INDEL	I6_15	map_l250_m2_e0	*	59.4595	50.0000	73.3333	97.3022	4	4	11	4	1	25.0000
qzeng-custom	INDEL	I6_15	map_l250_m2_e1	*	59.4595	50.0000	73.3333	97.3684	4	4	11	4	1	25.0000
mlin-fermikit	INDEL	D16_PLUS	map_l150_m1_e0	*	59.4595	73.3333	50.0000	93.6047	11	4	11	11	2	18.1818
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	59.4534	45.9538	84.1837	88.0196	159	187	165	31	5	16.1290
eyeh-varpipe	INDEL	D16_PLUS	HG002complexvar	*	59.4403	51.7955	69.7324	50.7211	851	792	834	362	361	99.7238
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	hetalt	59.4347	42.5101	98.7500	56.1644	105	142	158	2	2	100.0000
anovak-vg	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.4331	51.2295	70.7650	59.7360	250	238	259	107	80	74.7664
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	59.4318	53.0864	67.5000	54.5455	43	38	54	26	25	96.1538
ciseli-custom	INDEL	*	map_l250_m1_e0	homalt	59.4286	47.7064	78.7879	96.7977	52	57	52	14	8	57.1429
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	59.4214	43.1818	95.2381	93.9481	19	25	20	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge