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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 935 936 937 938 939 940 941 942 943 ... 1720 1721 » 46901-46950 / 86044 show all
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	59.9292	69.6296	52.6012	68.2569	94	41	91	82	79	96.3415
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	59.9212	54.8636	66.0058	31.4666	5189	4269	5194	2675	2487	92.9720
mlin-fermikit	INDEL	D1_5	HG002compoundhet	het	59.9144	80.4398	47.7343	63.4097	1390	338	1380	1511	1467	97.0880
anovak-vg	INDEL	D16_PLUS	map_siren	homalt	59.9144	44.1176	93.3333	91.0180	15	19	14	1	1	100.0000
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	59.9042	65.3860	55.2704	39.0162	1787	946	3015	2440	1867	76.5164
gduggal-snapvard	INDEL	C1_5	*	*	59.8991	90.0000	44.8865	88.9071	9	1	3125	3837	400	10.4248
anovak-vg	INDEL	I6_15	segdup	homalt	59.8909	80.8511	47.5610	87.6506	38	9	39	43	42	97.6744
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	59.8797	85.7519	46.0008	48.3317	7174	1192	7166	8412	7803	92.7603
gduggal-bwavard	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	59.8779	85.1773	46.1658	67.0074	1201	209	1192	1390	1248	89.7842
mlin-fermikit	INDEL	*	map_l125_m0_e0	*	59.8688	47.8458	79.9622	82.3077	422	460	423	106	75	70.7547
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.8657	45.0761	89.0995	75.7842	563	686	564	69	66	95.6522
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.8657	45.0761	89.0995	75.7842	563	686	564	69	66	95.6522
jmaeng-gatk	SNP	tv	map_l250_m1_e0	homalt	59.8528	42.7570	99.7275	93.2050	366	490	366	1	1	100.0000
anovak-vg	INDEL	I1_5	map_l150_m2_e1	*	59.8471	62.1469	57.7114	90.7116	330	201	348	255	162	63.5294
jpowers-varprowl	INDEL	D6_15	*	*	59.8326	55.9329	64.3169	53.9833	14594	11498	14589	8094	8006	98.9128
mlin-fermikit	INDEL	D16_PLUS	map_l100_m1_e0	*	59.8257	64.3678	55.8824	92.4500	56	31	57	45	15	33.3333
jpowers-varprowl	INDEL	D16_PLUS	map_l100_m2_e0	*	59.8250	53.3333	68.1159	96.2743	48	42	47	22	19	86.3636
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	59.8233	47.0725	82.0483	56.7574	1013	1139	1394	305	138	45.2459
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	59.8228	58.1169	61.6319	75.6941	1253	903	1624	1011	502	49.6538
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	59.8171	57.4468	62.3913	40.7216	108	80	287	173	145	83.8150
gduggal-snapvard	INDEL	D6_15	HG002compoundhet	*	59.7955	51.4782	71.3183	33.2912	4649	4382	4896	1969	1719	87.3032
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	59.7926	44.5455	90.9091	96.3211	49	61	50	5	4	80.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.7902	69.7674	52.3096	34.3980	420	182	419	382	382	100.0000
gduggal-snapvard	INDEL	D6_15	map_l125_m2_e0	homalt	59.7865	44.4444	91.3043	78.7037	16	20	21	2	2	100.0000
ghariani-varprowl	INDEL	D16_PLUS	map_l100_m1_e0	*	59.7750	58.6207	60.9756	96.0271	51	36	50	32	22	68.7500
gduggal-bwaplat	INDEL	D1_5	map_l250_m2_e1	het	59.7701	42.6230	100.0000	98.9735	52	70	52	0	0
mlin-fermikit	INDEL	D16_PLUS	map_siren	homalt	59.7701	76.4706	49.0566	94.4906	26	8	26	27	6	22.2222
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
gduggal-bwaplat	SNP	*	map_l150_m2_e0	homalt	59.7639	42.6276	99.9398	85.5833	4987	6712	4983	3	3	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	59.7633	44.9960	88.9590	75.7274	562	687	564	70	67	95.7143
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.7633	44.9960	88.9590	75.7274	562	687	564	70	67	95.7143
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	59.7610	42.8571	98.6842	72.9537	75	100	75	1	1	100.0000
ckim-vqsr	SNP	*	map_l100_m2_e0	homalt	59.7529	42.6116	99.9659	78.6625	11728	15795	11728	4	3	75.0000
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	59.7519	97.7584	43.0248	79.6303	4143	95	4253	5632	101	1.7933
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	59.7518	76.0417	49.2099	69.9253	219	69	218	225	200	88.8889
gduggal-bwafb	INDEL	I16_PLUS	*	hetalt	59.7317	43.8513	93.6441	57.0909	920	1178	221	15	15	100.0000
gduggal-snapvard	INDEL	D6_15	map_l100_m0_e0	homalt	59.7285	45.8333	85.7143	82.2785	11	13	12	2	2	100.0000
egarrison-hhga	INDEL	D6_15	HG002compoundhet	het	59.7254	89.0187	44.9378	47.8055	762	94	1336	1637	1603	97.9230
gduggal-bwaplat	SNP	ti	map_l250_m2_e1	het	59.7244	42.6796	99.4358	97.5469	1408	1891	1410	8	2	25.0000
ckim-vqsr	SNP	ti	map_l250_m2_e1	*	59.7117	42.8487	98.4608	97.0448	2175	2901	2175	34	0	0.0000
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	*	59.7015	42.5532	100.0000	98.0806	20	27	20	0	0
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	59.7015	62.5000	57.1429	82.5000	5	3	4	3	3	100.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	59.6850	58.5729	60.8400	68.6799	38278	27073	38154	24558	22520	91.7013
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	59.6850	58.5729	60.8400	68.6799	38278	27073	38154	24558	22520	91.7013
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.6849	56.0000	63.8889	83.7838	14	11	23	13	5	38.4615
gduggal-snapvard	INDEL	I6_15	map_l125_m1_e0	*	59.6747	64.1509	55.7823	82.2678	34	19	82	65	50	76.9231
ciseli-custom	INDEL	D16_PLUS	*	*	59.6718	52.7860	68.6237	57.6195	3581	3203	3565	1630	1503	92.2086
qzeng-custom	INDEL	I1_5	map_l250_m1_e0	homalt	59.6512	43.1818	96.4286	96.5895	19	25	27	1	0	0.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	59.6473	59.7203	59.5745	39.9758	12300	8296	17724	12027	10545	87.6777

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