PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46851-46900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 50.0000 | 75.0000 | 96.8627 | 5 | 5 | 6 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 98.2222 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | homalt | 60.0000 | 49.1379 | 77.0270 | 96.9384 | 57 | 59 | 57 | 17 | 11 | 64.7059 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.8710 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 60.0000 | 100.0000 | 42.8571 | 98.8553 | 7 | 0 | 6 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 100.0000 | 42.8571 | 97.1774 | 3 | 0 | 3 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 97.9021 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 60.0000 | 56.2500 | 64.2857 | 95.4173 | 9 | 7 | 18 | 10 | 2 | 20.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.9286 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.8909 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | * | 60.0000 | 77.7778 | 48.8372 | 93.2602 | 21 | 6 | 21 | 22 | 3 | 13.6364 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 95.7143 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 96.3415 | 3 | 4 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 60.0000 | 43.3735 | 97.2973 | 32.7273 | 36 | 47 | 36 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 95.7627 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 95.9677 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 60.0000 | 50.0000 | 75.0000 | 60.0000 | 2 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 50.0000 | 75.0000 | 97.9899 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7143 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7401 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | * | 60.0000 | 42.8571 | 100.0000 | 97.6967 | 12 | 16 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.2718 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 99.3421 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0000 | 42.8571 | 100.0000 | 99.2126 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | het | 60.0000 | 42.8571 | 100.0000 | 99.2288 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 96.7391 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 97.1963 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.0000 | 42.8571 | 100.0000 | 99.3088 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.0000 | 46.1538 | 85.7143 | 98.6805 | 12 | 14 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.0000 | 42.8571 | 100.0000 | 99.9796 | 9 | 12 | 10 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 59.9965 | 83.1683 | 46.9231 | 93.4110 | 84 | 17 | 61 | 69 | 13 | 18.8406 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | homalt | 59.9931 | 42.8606 | 99.9429 | 72.5764 | 1750 | 2333 | 1750 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | homalt | 59.9917 | 42.8596 | 99.9408 | 85.5254 | 5069 | 6758 | 5065 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.9738 | 55.8902 | 64.7011 | 63.2619 | 17554 | 13854 | 17358 | 9470 | 8822 | 93.1573 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.9738 | 55.8902 | 64.7011 | 63.2619 | 17554 | 13854 | 17358 | 9470 | 8822 | 93.1573 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | homalt | 59.9718 | 50.8826 | 73.0143 | 56.6613 | 5736 | 5537 | 5736 | 2120 | 1986 | 93.6792 | |
| ckim-vqsr | SNP | * | map_l100_m2_e1 | homalt | 59.9673 | 42.8299 | 99.9664 | 78.5551 | 11905 | 15891 | 11905 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 59.9599 | 42.9829 | 99.1026 | 48.8525 | 830 | 1101 | 773 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 59.9599 | 42.9829 | 99.1026 | 48.8525 | 830 | 1101 | 773 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 59.9593 | 59.9593 | 59.9593 | 55.8744 | 295 | 197 | 295 | 197 | 173 | 87.8173 | |
| gduggal-snapplat | INDEL | * | func_cds | het | 59.9589 | 51.8692 | 71.0383 | 65.2751 | 111 | 103 | 130 | 53 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.9388 | 63.0225 | 57.1429 | 46.3295 | 196 | 115 | 376 | 282 | 235 | 83.3333 | |