PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46801-46850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | * | 60.1890 | 64.1509 | 56.6879 | 82.9162 | 34 | 19 | 89 | 68 | 53 | 77.9412 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.1889 | 88.8889 | 45.4986 | 84.0583 | 640 | 80 | 657 | 787 | 7 | 0.8895 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 60.1689 | 43.1017 | 99.6134 | 31.8701 | 831 | 1097 | 773 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 60.1668 | 61.4104 | 58.9725 | 57.4072 | 5164 | 3245 | 7289 | 5071 | 4386 | 86.4918 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.1656 | 43.9300 | 95.4373 | 42.4088 | 778 | 993 | 753 | 36 | 29 | 80.5556 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 60.1585 | 64.6439 | 56.2551 | 36.6040 | 9449 | 5168 | 18693 | 14536 | 11429 | 78.6255 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | homalt | 60.1387 | 43.0092 | 99.9438 | 72.5081 | 1778 | 2356 | 1778 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.1378 | 44.2087 | 94.0120 | 60.5667 | 500 | 631 | 942 | 60 | 57 | 95.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | * | 60.1307 | 43.0951 | 99.4396 | 91.3095 | 1242 | 1640 | 1242 | 7 | 1 | 14.2857 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | homalt | 60.1307 | 42.9907 | 100.0000 | 93.6519 | 368 | 488 | 368 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 60.1249 | 45.9646 | 86.8947 | 58.2953 | 3138 | 3689 | 3176 | 479 | 423 | 88.3090 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | * | 60.1229 | 46.0705 | 86.5103 | 52.4193 | 10030 | 11741 | 10030 | 1564 | 1408 | 90.0256 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 60.1129 | 67.5926 | 54.1237 | 69.5925 | 73 | 35 | 105 | 89 | 26 | 29.2135 | |
| ckim-vqsr | SNP | tv | map_l150_m0_e0 | * | 60.1129 | 43.3637 | 97.9437 | 94.7907 | 1810 | 2364 | 1810 | 38 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | het | 60.1108 | 53.7113 | 68.2415 | 93.5631 | 1042 | 898 | 1040 | 484 | 21 | 4.3388 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e0 | * | 60.1093 | 43.6508 | 96.4912 | 90.7015 | 55 | 71 | 55 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | HG002complexvar | homalt | 60.1083 | 92.0445 | 44.6250 | 54.8278 | 1076 | 93 | 1071 | 1329 | 1061 | 79.8345 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | homalt | 60.0968 | 99.5627 | 43.0372 | 84.8886 | 683 | 3 | 683 | 904 | 898 | 99.3363 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.0653 | 42.9847 | 99.6711 | 45.3237 | 337 | 447 | 303 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 60.0589 | 91.9736 | 44.5872 | 75.8345 | 1673 | 146 | 1701 | 2114 | 1899 | 89.8297 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 60.0589 | 91.9736 | 44.5872 | 75.8345 | 1673 | 146 | 1701 | 2114 | 1899 | 89.8297 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 60.0572 | 82.6840 | 47.1535 | 44.1989 | 382 | 80 | 381 | 427 | 422 | 98.8290 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.0475 | 46.9799 | 83.1858 | 54.4355 | 70 | 79 | 94 | 19 | 19 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.0456 | 65.5567 | 55.3892 | 58.1977 | 630 | 331 | 740 | 596 | 423 | 70.9732 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | * | 60.0321 | 64.1509 | 56.4103 | 82.6087 | 34 | 19 | 88 | 68 | 53 | 77.9412 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 60.0266 | 74.1071 | 50.4425 | 79.7491 | 83 | 29 | 57 | 56 | 18 | 32.1429 | |
| egarrison-hhga | INDEL | D16_PLUS | * | hetalt | 60.0179 | 43.0419 | 99.1060 | 48.8235 | 832 | 1101 | 776 | 7 | 6 | 85.7143 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | * | 60.0000 | 42.9543 | 99.4751 | 90.6960 | 1137 | 1510 | 1137 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 79.3103 | 12 | 16 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l100_m0_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 77.7778 | 6 | 8 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 60.0000 | 44.1176 | 93.7500 | 72.6496 | 30 | 38 | 30 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.0000 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 95.0820 | 3 | 4 | 3 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 98.1982 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | homalt | 60.0000 | 46.1538 | 85.7143 | 75.8621 | 6 | 7 | 6 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | segdup | homalt | 60.0000 | 63.1579 | 57.1429 | 87.7907 | 12 | 7 | 12 | 9 | 5 | 55.5556 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 60.0000 | 75.0000 | 50.0000 | 98.1763 | 3 | 1 | 3 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 60.0000 | 66.6667 | 54.5455 | 98.9413 | 6 | 3 | 6 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 93.3333 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 94.7368 | 3 | 4 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 96.9697 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 97.1264 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 60.0000 | 50.0000 | 75.0000 | 85.7143 | 3 | 3 | 3 | 1 | 0 | 0.0000 | |