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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46651-46700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.9341 | 95.6793 | 44.7012 | 53.4443 | 11980 | 541 | 12051 | 14908 | 14726 | 98.7792 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.9324 | 77.3279 | 50.2732 | 71.4953 | 191 | 56 | 184 | 182 | 167 | 91.7582 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | homalt | 60.9272 | 43.8792 | 99.6390 | 88.3516 | 276 | 353 | 276 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.9265 | 84.9007 | 47.5105 | 54.7800 | 9750 | 1734 | 9733 | 10753 | 9871 | 91.7976 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.9231 | 51.0140 | 75.6098 | 42.2535 | 327 | 314 | 124 | 40 | 40 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | * | 60.9208 | 60.3448 | 61.5079 | 79.7590 | 70 | 46 | 155 | 97 | 79 | 81.4433 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | homalt | 60.9137 | 51.7241 | 74.0741 | 92.4791 | 60 | 56 | 60 | 21 | 20 | 95.2381 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | * | 60.9023 | 43.7838 | 100.0000 | 98.7465 | 81 | 104 | 81 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.8995 | 44.8091 | 95.0199 | 66.3989 | 669 | 824 | 954 | 50 | 47 | 94.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 60.8979 | 43.9836 | 98.9498 | 39.8596 | 859 | 1094 | 848 | 9 | 7 | 77.7778 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.8920 | 54.0284 | 69.7531 | 54.6218 | 114 | 97 | 113 | 49 | 49 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | het | 60.8863 | 43.9547 | 99.0352 | 95.3638 | 3490 | 4450 | 3490 | 34 | 14 | 41.1765 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.8792 | 59.0648 | 62.8085 | 52.6630 | 21613 | 14979 | 21581 | 12779 | 12331 | 96.4942 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 60.8751 | 59.9982 | 61.7781 | 66.5944 | 39207 | 26140 | 39525 | 24454 | 17134 | 70.0662 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.8696 | 43.7500 | 100.0000 | 99.2299 | 7 | 9 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | homalt | 60.8696 | 43.7500 | 100.0000 | 72.0000 | 28 | 36 | 28 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m0_e0 | hetalt | 60.8696 | 43.7500 | 100.0000 | 79.4118 | 7 | 9 | 7 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 60.8696 | 100.0000 | 43.7500 | 99.4686 | 6 | 0 | 7 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 60.8696 | 77.7778 | 50.0000 | 52.2124 | 28 | 8 | 27 | 27 | 21 | 77.7778 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.8637 | 44.5230 | 96.1538 | 69.9074 | 126 | 157 | 125 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | * | 60.8583 | 72.0000 | 52.7027 | 87.7888 | 18 | 7 | 39 | 35 | 27 | 77.1429 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 60.8555 | 82.6087 | 48.1707 | 53.0086 | 76 | 16 | 79 | 85 | 74 | 87.0588 | |
| astatham-gatk | INDEL | * | HG002compoundhet | homalt | 60.8541 | 99.7085 | 43.7900 | 84.6320 | 684 | 2 | 684 | 878 | 876 | 99.7722 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | hetalt | 60.8513 | 43.9832 | 98.7067 | 61.4827 | 4916 | 6261 | 5190 | 68 | 65 | 95.5882 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.8435 | 85.3147 | 47.2815 | 88.9072 | 2318 | 399 | 2261 | 2521 | 114 | 4.5220 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 60.8295 | 43.7086 | 100.0000 | 34.7826 | 66 | 85 | 75 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | het | 60.8031 | 45.0382 | 93.5484 | 89.8527 | 59 | 72 | 58 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 60.8000 | 46.3415 | 88.3721 | 66.6667 | 38 | 44 | 38 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 60.7839 | 44.6237 | 95.2941 | 48.1707 | 83 | 103 | 81 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | het | 60.7541 | 43.9737 | 98.2445 | 60.8741 | 12485 | 15907 | 12480 | 223 | 8 | 3.5874 | |
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | * | 60.7533 | 43.9130 | 98.5441 | 93.9394 | 3452 | 4409 | 3452 | 51 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | hetalt | 60.7460 | 57.5758 | 64.2857 | 94.2857 | 19 | 14 | 9 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.7416 | 67.9902 | 54.8896 | 38.6127 | 2226 | 1048 | 3755 | 3086 | 2432 | 78.8075 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | hetalt | 60.7330 | 43.9394 | 98.3051 | 86.6817 | 58 | 74 | 58 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | het | 60.7261 | 43.6019 | 100.0000 | 99.0542 | 92 | 119 | 92 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 60.7229 | 93.3333 | 45.0000 | 76.4706 | 14 | 1 | 18 | 22 | 21 | 95.4545 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.7128 | 46.4157 | 87.7382 | 45.3351 | 4390 | 5068 | 4236 | 592 | 317 | 53.5473 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |