PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4601-4650 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9949 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 98.2405 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 98.2063 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9687 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9776 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8478 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9339 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4513 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5206 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9979 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9970 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 59.2593 | 33 | 0 | 33 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.6161 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6813 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.2674 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8641 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8605 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.8861 | 19 | 0 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 41.6667 | 12 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 12 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.2928 | 23 | 0 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 23.9437 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 68.9655 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.5612 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7952 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.8095 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9714 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9833 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6610 | 1 | 0 | 1 | 0 | 0 | ||