PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46251-46300 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.9322 | 68.7879 | 57.9952 | 52.5481 | 227 | 103 | 243 | 176 | 130 | 73.8636 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.9139 | 46.2662 | 98.2759 | 80.8707 | 285 | 331 | 285 | 5 | 5 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m0_e0 | homalt | 62.9127 | 56.0069 | 71.7609 | 49.3097 | 6508 | 5112 | 6508 | 2561 | 2415 | 94.2991 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.9012 | 59.7110 | 66.4516 | 34.9559 | 1033 | 697 | 1030 | 520 | 432 | 83.0769 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.8983 | 80.9524 | 51.4286 | 99.9273 | 17 | 4 | 18 | 17 | 13 | 76.4706 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.8931 | 46.2963 | 98.0392 | 83.4684 | 100 | 116 | 100 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 62.8863 | 47.7273 | 92.1569 | 90.4315 | 21 | 23 | 47 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 62.8790 | 57.8527 | 68.8617 | 41.8554 | 7975 | 5810 | 7937 | 3589 | 3504 | 97.6317 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | * | 62.8773 | 55.7315 | 72.1249 | 36.3543 | 4891 | 3885 | 4898 | 1893 | 1888 | 99.7359 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.8725 | 52.4099 | 78.5542 | 50.1920 | 1033 | 938 | 1630 | 445 | 427 | 95.9551 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 62.8725 | 52.4099 | 78.5542 | 50.1920 | 1033 | 938 | 1630 | 445 | 427 | 95.9551 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.8595 | 61.5385 | 64.2384 | 88.8643 | 88 | 55 | 97 | 54 | 16 | 29.6296 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | homalt | 62.8571 | 45.8333 | 100.0000 | 74.4186 | 11 | 13 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 62.8571 | 46.8085 | 95.6522 | 83.6879 | 22 | 25 | 22 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | * | 62.8571 | 50.0000 | 84.6154 | 96.0366 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | * | 62.8571 | 50.0000 | 84.6154 | 96.0961 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.8571 | 55.0000 | 73.3333 | 99.5745 | 11 | 9 | 11 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 62.8571 | 45.8333 | 100.0000 | 89.5928 | 22 | 26 | 23 | 0 | 0 | ||
| ciseli-custom | SNP | * | map_l250_m2_e1 | het | 62.8544 | 57.5608 | 69.2202 | 93.5567 | 3030 | 2234 | 3027 | 1346 | 41 | 3.0461 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 62.8497 | 47.7273 | 92.0000 | 89.9194 | 21 | 23 | 46 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | homalt | 62.8388 | 45.8138 | 100.0000 | 79.0338 | 1762 | 2084 | 1762 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.8380 | 55.5936 | 72.2533 | 62.8887 | 487 | 389 | 388 | 149 | 145 | 97.3154 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8376 | 94.6349 | 47.0342 | 60.4447 | 16863 | 956 | 16945 | 19082 | 18800 | 98.5222 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | * | 62.7919 | 49.6210 | 85.4813 | 62.5997 | 8182 | 8307 | 8178 | 1389 | 1218 | 87.6890 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 62.7686 | 68.2214 | 58.1230 | 35.1882 | 8542 | 3979 | 16951 | 12213 | 9571 | 78.3673 | |
| ciseli-custom | INDEL | I1_5 | map_siren | homalt | 62.7683 | 50.4950 | 82.9235 | 77.4631 | 612 | 600 | 607 | 125 | 97 | 77.6000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 62.7651 | 58.8235 | 67.2727 | 64.5161 | 40 | 28 | 37 | 18 | 18 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7608 | 46.6890 | 95.7058 | 37.3301 | 2228 | 2544 | 2251 | 101 | 89 | 88.1188 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7551 | 45.8955 | 99.1935 | 78.4909 | 246 | 290 | 246 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | het | 62.7486 | 57.4894 | 69.0669 | 93.5182 | 2986 | 2208 | 2983 | 1336 | 41 | 3.0689 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 62.7472 | 53.2934 | 76.2784 | 60.3827 | 534 | 468 | 537 | 167 | 161 | 96.4072 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7001 | 46.0184 | 98.3531 | 38.3761 | 2196 | 2576 | 1911 | 32 | 29 | 90.6250 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 62.6866 | 53.8462 | 75.0000 | 63.6364 | 7 | 6 | 12 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | * | 62.6787 | 48.9002 | 87.2681 | 57.2976 | 22165 | 23162 | 22160 | 3233 | 2859 | 88.4318 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | * | 62.6607 | 45.6542 | 99.8585 | 84.1129 | 22592 | 26893 | 22588 | 32 | 12 | 37.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 62.6589 | 45.8248 | 99.0431 | 30.1003 | 225 | 266 | 207 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.6517 | 96.2893 | 46.4314 | 47.0193 | 7110 | 274 | 7143 | 8241 | 8121 | 98.5439 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 62.6506 | 45.6140 | 100.0000 | 93.7274 | 52 | 62 | 52 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.6355 | 82.0408 | 50.6542 | 55.8581 | 402 | 88 | 542 | 528 | 513 | 97.1591 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 62.6263 | 88.5714 | 48.4375 | 94.7840 | 31 | 4 | 31 | 33 | 6 | 18.1818 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.6217 | 78.5714 | 52.0548 | 84.3011 | 33 | 9 | 38 | 35 | 10 | 28.5714 | |
| gduggal-bwavard | INDEL | D6_15 | * | * | 62.6145 | 59.4780 | 66.1003 | 55.5649 | 15519 | 10573 | 15367 | 7881 | 7658 | 97.1704 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | * | 62.6026 | 49.1713 | 86.1290 | 76.1722 | 267 | 276 | 267 | 43 | 36 | 83.7209 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ckim-isaac | SNP | ti | map_l250_m0_e0 | homalt | 62.5786 | 45.6422 | 99.5000 | 87.4451 | 199 | 237 | 199 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 62.5767 | 48.0000 | 89.8678 | 23.0508 | 312 | 338 | 204 | 23 | 21 | 91.3043 | |
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | het | 62.5646 | 57.7025 | 68.3215 | 96.1752 | 869 | 637 | 867 | 402 | 13 | 3.2338 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |