PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45901-45950 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.5844 | 94.0959 | 49.1648 | 73.3293 | 1275 | 80 | 1295 | 1339 | 1224 | 91.4115 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 64.5823 | 60.5420 | 69.2004 | 40.5056 | 14857 | 9683 | 14739 | 6560 | 6397 | 97.5152 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.5816 | 61.9705 | 67.4224 | 73.1294 | 1302 | 799 | 1368 | 661 | 606 | 91.6793 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.5786 | 95.6522 | 48.7437 | 63.6197 | 22 | 1 | 97 | 102 | 88 | 86.2745 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | homalt | 64.5756 | 61.6197 | 67.8295 | 81.8820 | 175 | 109 | 175 | 83 | 68 | 81.9277 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | het | 64.5750 | 60.5996 | 69.1087 | 96.2053 | 566 | 368 | 566 | 253 | 6 | 2.3715 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | het | 64.5740 | 53.3333 | 81.8182 | 86.4198 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5740 | 53.3333 | 81.8182 | 89.0000 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.5688 | 48.5114 | 96.5157 | 77.0400 | 277 | 294 | 277 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.5683 | 53.9483 | 80.3942 | 65.4232 | 731 | 624 | 775 | 189 | 165 | 87.3016 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | * | 64.5598 | 68.4211 | 61.1111 | 50.0000 | 13 | 6 | 11 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.5522 | 47.6584 | 100.0000 | 63.8075 | 173 | 190 | 173 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e1 | * | 64.5467 | 47.7776 | 99.4527 | 91.0189 | 3816 | 4171 | 3816 | 21 | 4 | 19.0476 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5327 | 93.3333 | 49.3151 | 88.3013 | 14 | 1 | 36 | 37 | 29 | 78.3784 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.5161 | 58.8235 | 71.4286 | 94.8529 | 10 | 7 | 10 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_siren | homalt | 64.5161 | 47.6190 | 100.0000 | 86.3014 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.4615 | 10 | 11 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | hetalt | 64.5161 | 47.6190 | 100.0000 | 98.6431 | 10 | 11 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.5118 | 50.6716 | 88.7536 | 66.8832 | 9205 | 8961 | 9186 | 1164 | 976 | 83.8488 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.5118 | 50.6716 | 88.7536 | 66.8832 | 9205 | 8961 | 9186 | 1164 | 976 | 83.8488 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.5069 | 48.0447 | 98.1308 | 30.0654 | 86 | 93 | 105 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 64.4951 | 47.5962 | 100.0000 | 91.0163 | 99 | 109 | 99 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 64.4853 | 99.1348 | 47.7839 | 65.3135 | 1375 | 12 | 1380 | 1508 | 7 | 0.4642 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | homalt | 64.4820 | 47.5819 | 100.0000 | 81.7585 | 2863 | 3154 | 2863 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | het | 64.4737 | 48.2283 | 97.2222 | 82.1403 | 245 | 263 | 245 | 7 | 4 | 57.1429 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4675 | 51.4286 | 86.3636 | 81.9672 | 18 | 17 | 19 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 64.4666 | 47.9448 | 98.3624 | 43.7187 | 3266 | 3546 | 2763 | 46 | 36 | 78.2609 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.4614 | 84.9116 | 51.9498 | 59.0528 | 816 | 145 | 786 | 727 | 719 | 98.8996 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.4567 | 61.1138 | 68.1865 | 74.1910 | 1284 | 817 | 1316 | 614 | 580 | 94.4625 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | * | 64.4492 | 47.6728 | 99.4444 | 90.9774 | 3759 | 4126 | 3759 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 64.4414 | 66.8008 | 62.2430 | 89.2549 | 332 | 165 | 333 | 202 | 174 | 86.1386 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.4294 | 85.0889 | 51.8421 | 37.0340 | 4354 | 763 | 4334 | 4026 | 3730 | 92.6478 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 64.4258 | 55.5556 | 76.6667 | 93.2584 | 5 | 4 | 23 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 64.4256 | 95.0820 | 48.7179 | 70.6767 | 58 | 3 | 57 | 60 | 52 | 86.6667 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 64.4166 | 93.0962 | 49.2457 | 68.6592 | 445 | 33 | 457 | 471 | 445 | 94.4798 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | * | 64.4116 | 67.9487 | 61.2245 | 98.1965 | 53 | 25 | 60 | 38 | 20 | 52.6316 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | homalt | 64.3926 | 47.5190 | 99.8478 | 66.4710 | 1312 | 1449 | 1312 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 64.3918 | 47.8099 | 98.5834 | 40.4750 | 3853 | 4206 | 3410 | 49 | 42 | 85.7143 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 64.3918 | 47.8099 | 98.5834 | 40.4750 | 3853 | 4206 | 3410 | 49 | 42 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 64.3883 | 66.6667 | 62.2605 | 88.3768 | 324 | 162 | 325 | 197 | 169 | 85.7868 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | het | 64.3765 | 59.8060 | 69.7034 | 93.5598 | 1973 | 1326 | 1974 | 858 | 20 | 2.3310 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.3730 | 59.4553 | 70.1776 | 54.1149 | 2336 | 1593 | 2332 | 991 | 976 | 98.4864 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.3678 | 47.4576 | 100.0000 | 54.8387 | 28 | 31 | 28 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 64.3676 | 52.1127 | 84.1584 | 21.7054 | 74 | 68 | 85 | 16 | 16 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | het | 64.3552 | 47.4851 | 99.8174 | 85.5215 | 14218 | 15724 | 14214 | 26 | 10 | 38.4615 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.3489 | 66.6667 | 62.1868 | 95.0669 | 2 | 1 | 273 | 166 | 40 | 24.0964 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |