PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45751-45800 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | map_l150_m2_e1 | * | 65.3436 | 59.0688 | 73.1100 | 93.1469 | 850 | 589 | 851 | 313 | 195 | 62.3003 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 65.3061 | 72.7273 | 59.2593 | 88.7967 | 8 | 3 | 16 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | homalt | 65.2941 | 54.4118 | 81.6176 | 84.1676 | 111 | 93 | 111 | 25 | 23 | 92.0000 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | * | 65.2883 | 59.0199 | 73.0465 | 93.1719 | 831 | 577 | 832 | 307 | 191 | 62.2150 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.7419 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | het | 65.2727 | 48.4981 | 99.7873 | 85.9875 | 15015 | 15945 | 15011 | 32 | 12 | 37.5000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2672 | 54.2857 | 81.8182 | 88.5417 | 19 | 16 | 18 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.2610 | 83.5526 | 53.5398 | 93.1390 | 127 | 25 | 121 | 105 | 14 | 13.3333 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.2473 | 96.5460 | 49.2736 | 54.6440 | 8106 | 290 | 8140 | 8380 | 8238 | 98.3055 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | homalt | 65.2389 | 48.4226 | 99.9495 | 85.6968 | 1980 | 2109 | 1980 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 65.2231 | 63.7325 | 66.7851 | 42.6875 | 23321 | 13271 | 40773 | 20278 | 18291 | 90.2012 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2182 | 88.7879 | 51.5371 | 58.1061 | 293 | 37 | 285 | 268 | 261 | 97.3881 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | het | 65.2174 | 93.7500 | 50.0000 | 88.5093 | 15 | 1 | 37 | 37 | 29 | 78.3784 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | * | 65.2174 | 48.3871 | 100.0000 | 96.3154 | 150 | 160 | 150 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l125_m1_e0 | * | 65.2174 | 55.5556 | 78.9474 | 91.3242 | 15 | 12 | 15 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.2174 | 71.4286 | 60.0000 | 94.8454 | 5 | 2 | 6 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 65.2174 | 50.0000 | 93.7500 | 72.8814 | 15 | 15 | 15 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | * | 65.2174 | 48.9130 | 97.8261 | 96.9405 | 90 | 94 | 90 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | het | 65.2113 | 55.3191 | 79.4118 | 85.2174 | 26 | 21 | 27 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | ti | map_l250_m0_e0 | het | 65.2051 | 49.3576 | 96.0417 | 98.3380 | 461 | 473 | 461 | 19 | 2 | 10.5263 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 65.2028 | 60.0760 | 71.2862 | 53.7688 | 790 | 525 | 787 | 317 | 306 | 96.5300 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.1949 | 54.6559 | 80.7692 | 61.1940 | 135 | 112 | 189 | 45 | 43 | 95.5556 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 65.1903 | 73.6735 | 58.4590 | 47.5626 | 361 | 129 | 1396 | 992 | 627 | 63.2056 | |
| ckim-isaac | INDEL | I16_PLUS | HG002compoundhet | hetalt | 65.1901 | 48.5428 | 99.2149 | 33.3115 | 1016 | 1077 | 1011 | 8 | 7 | 87.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.1883 | 81.5920 | 54.2763 | 83.4962 | 164 | 37 | 165 | 139 | 136 | 97.8417 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 65.1881 | 61.0909 | 69.8745 | 86.3116 | 168 | 107 | 167 | 72 | 69 | 95.8333 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1835 | 87.6412 | 51.8876 | 46.8905 | 9077 | 1280 | 9044 | 8386 | 7588 | 90.4841 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1709 | 54.2531 | 81.5900 | 69.4864 | 8451 | 7126 | 8323 | 1878 | 1704 | 90.7348 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | * | 65.1609 | 58.8939 | 72.9205 | 92.7722 | 788 | 550 | 789 | 293 | 182 | 62.1160 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | * | 65.1571 | 52.8145 | 85.0279 | 85.1378 | 760 | 679 | 761 | 134 | 106 | 79.1045 | |
| eyeh-varpipe | INDEL | * | HG002compoundhet | het | 65.1467 | 80.9233 | 54.5181 | 69.0092 | 3313 | 781 | 1267 | 1057 | 968 | 91.5799 | |
| ckim-isaac | SNP | ti | map_l150_m1_e0 | homalt | 65.1458 | 48.3281 | 99.9153 | 66.1412 | 3541 | 3786 | 3541 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 65.1402 | 48.3022 | 100.0000 | 66.1836 | 569 | 609 | 560 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 65.1353 | 53.6585 | 82.8571 | 85.6026 | 198 | 171 | 290 | 60 | 5 | 8.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 65.1258 | 48.6464 | 98.4906 | 44.0338 | 575 | 607 | 522 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.1217 | 48.6537 | 98.4416 | 40.4065 | 3921 | 4138 | 3348 | 53 | 40 | 75.4717 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.1217 | 48.6537 | 98.4416 | 40.4065 | 3921 | 4138 | 3348 | 53 | 40 | 75.4717 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | het | 65.1163 | 70.0000 | 60.8696 | 93.5754 | 14 | 6 | 14 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 65.1163 | 50.0000 | 93.3333 | 95.0000 | 14 | 14 | 14 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 65.1163 | 66.6667 | 63.6364 | 84.7222 | 2 | 1 | 7 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1163 | 73.2026 | 58.6387 | 74.4652 | 112 | 41 | 112 | 79 | 62 | 78.4810 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.0972 | 48.9985 | 96.9512 | 78.2925 | 318 | 331 | 318 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.0860 | 56.7347 | 76.3203 | 57.3091 | 417 | 318 | 448 | 139 | 119 | 85.6115 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||