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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
44701-44750 / 86044 show all
gduggal-bwaplatINDELI1_5map_l125_m0_e0het
67.1280
50.5208
100.0000
96.7944
97959700
qzeng-customINDELI6_15map_sirenhet
67.1265
81.8182
56.9079
78.8889
117261731317
5.3435
eyeh-varpipeINDELD16_PLUSsegdup*
67.1246
62.0690
73.0769
90.0192
3622381414
100.0000
anovak-vgINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
67.1212
72.5490
62.4490
44.0639
11142306184163
88.5870
qzeng-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
67.1186
91.6667
52.9412
99.4967
111980
0.0000
mlin-fermikitINDEL*HG002compoundhet*
67.1085
66.3284
67.9072
58.7807
19872100881976193399228
98.8114
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
67.1082
50.8361
98.7013
60.3433
45644145666
100.0000
gduggal-bwafbINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
67.1080
54.2510
87.9518
61.8098
1341132193030
100.0000
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.1072
91.8336
52.8714
33.4573
59653312127822751
98.8857
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
67.0995
63.6364
70.9612
72.1865
13727841410577119
20.6239
ckim-isaacSNP*map_l250_m2_e1het
67.0943
50.6649
99.2926
92.2258
266725972667192
10.5263
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
67.0927
72.4138
62.5000
88.2086
6324653920
51.2821
mlin-fermikitINDELD1_5map_l125_m1_e0het
67.0857
51.2397
97.1204
79.0685
372354371114
36.3636
gduggal-snapvardINDELD6_15HG002compoundhethet
67.0812
63.3178
71.3203
33.1905
542314489419681718
87.2967
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
67.0732
55.5556
84.6154
78.3333
1081122
100.0000
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
67.0699
85.4447
55.1993
68.7686
634108637517507
98.0658
gduggal-bwaplatSNPtimap_l125_m2_e0homalt
67.0606
50.4578
99.9476
79.7932
57315627572433
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
67.0565
50.4399
100.0000
42.0339
17216917100
mlin-fermikitSNPtimap_l125_m2_e1homalt
67.0382
58.2650
78.9219
57.4454
66764782667617831698
95.2328
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.0378
96.3964
51.3872
89.5473
4281642640327
6.6998
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
67.0371
50.6098
99.2537
54.5763
16616213310
0.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
anovak-vgINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
67.0246
87.7551
54.2169
78.5530
436453831
81.5789
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
67.0213
64.2857
70.0000
99.4553
271528125
41.6667
ciseli-customINDEL*map_l150_m2_e1het
67.0194
62.9870
71.6034
93.6172
582342585232136
58.6207
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
gduggal-bwaplatSNP*map_l125_m0_e0het
67.0117
50.6238
99.0887
93.0436
6411625364155919
32.2034
jpowers-varprowlINDELI6_15map_l100_m1_e0*
67.0103
57.0175
81.2500
85.1852
6549651515
100.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
67.0086
90.2935
53.2710
31.8471
40043399350337
96.2857
jpowers-varprowlINDELI6_15map_l100_m2_e0*
67.0051
56.8966
81.4815
86.4775
6650661515
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e1*
67.0051
56.8966
81.4815
86.6776
6650661515
100.0000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
66.9912
56.0811
83.1715
93.2356
2491952575222
42.3077
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
66.9909
56.2201
82.8667
28.6733
2351831243257257
100.0000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.9905
53.7415
88.9096
95.4327
94881695411918
15.1261
anovak-vgINDELI1_5map_l250_m0_e0homalt
66.9856
77.7778
58.8235
97.3725
721077
100.0000
ckim-dragenINDELD1_5HG002compoundhethomalt
66.9786
99.6564
50.4394
90.3836
2901287282281
99.6454
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
66.9692
50.8453
98.0681
41.1478
1203116310662114
66.6667
gduggal-bwaplatINDEL*map_l125_m0_e0*
66.9676
50.4535
99.5526
96.3322
44543744520
0.0000
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
66.9540
81.9672
56.5891
68.9157
501114611291
81.2500
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50het
66.9508
90.0254
53.2915
48.7249
141881572142721250912414
99.2405
gduggal-bwaplatINDELD1_5HG002compoundhethet
66.9499
56.3657
82.4278
83.5498
97475497120777
37.1981
gduggal-snapfbINDELI6_15HG002compoundhet*
66.9443
57.2812
80.5291
25.2164
50273749584414131393
98.5846
ciseli-customSNPtvHG002compoundhet*
66.9226
84.5568
55.3744
51.6390
7545137875736103515
8.4385
gduggal-snapvardINDELD6_15map_l100_m2_e0*
66.9120
61.7424
73.0263
82.9213
1631012228258
70.7317
ciseli-customINDEL*map_l150_m2_e0het
66.9093
62.8035
71.5895
93.6451
569337572227132
58.1498
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
66.9076
92.2101
52.5013
83.8765
1018861039940100
10.6383
ciseli-customINDELD16_PLUS*homalt
66.9047
89.8936
53.2793
59.6184
1521171151113251241
93.6604
ckim-vqsrSNPtimap_l150_m2_e1*
66.9029
50.5622
98.8488
91.2579
1047810245104761223
2.4590
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
66.9020
71.8258
62.6099
52.3713
196377022071318760
57.6631