PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44551-44600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | homalt | 67.9612 | 52.2388 | 97.2222 | 85.3659 | 35 | 32 | 35 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9552 | 65.9379 | 70.1000 | 59.0467 | 4011 | 2072 | 3927 | 1675 | 1645 | 98.2090 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 67.9537 | 55.0000 | 88.8889 | 89.6552 | 11 | 9 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9468 | 52.3520 | 96.7742 | 75.1654 | 690 | 628 | 690 | 23 | 22 | 95.6522 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.9381 | 51.9442 | 98.1629 | 49.9600 | 1229 | 1137 | 1229 | 23 | 22 | 95.6522 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.9365 | 51.9417 | 98.1651 | 46.0396 | 107 | 99 | 107 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 67.9363 | 62.1469 | 74.9153 | 66.2471 | 220 | 134 | 221 | 74 | 74 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 67.9335 | 76.4706 | 61.1111 | 99.5774 | 13 | 4 | 11 | 7 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.9265 | 61.4035 | 76.0000 | 99.4084 | 35 | 22 | 38 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 67.9245 | 54.5455 | 90.0000 | 84.1897 | 36 | 30 | 36 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | homalt | 67.9194 | 93.5860 | 53.3011 | 82.5513 | 321 | 22 | 331 | 290 | 267 | 92.0690 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.9183 | 93.2692 | 53.4031 | 79.4954 | 194 | 14 | 204 | 178 | 167 | 93.8202 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | * | 67.9069 | 51.4704 | 99.7662 | 76.9939 | 3413 | 3218 | 3413 | 8 | 1 | 12.5000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.8971 | 71.2871 | 64.8148 | 95.6696 | 72 | 29 | 70 | 38 | 8 | 21.0526 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | * | 67.8956 | 65.9686 | 69.9387 | 92.8194 | 126 | 65 | 114 | 49 | 38 | 77.5510 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 67.8919 | 98.5775 | 51.7751 | 39.8577 | 693 | 10 | 700 | 652 | 649 | 99.5399 | |
| jpowers-varprowl | INDEL | I6_15 | * | het | 67.8850 | 81.9496 | 57.9408 | 49.0356 | 8222 | 1811 | 8267 | 6001 | 5983 | 99.7000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.8720 | 57.3310 | 83.1622 | 50.3568 | 2002 | 1490 | 1215 | 246 | 238 | 96.7480 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.8674 | 53.7223 | 92.1233 | 62.9442 | 267 | 230 | 269 | 23 | 17 | 73.9130 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | het | 67.8635 | 76.9851 | 60.6744 | 48.9450 | 1813 | 542 | 2393 | 1551 | 1213 | 78.2076 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.8590 | 93.2584 | 53.3333 | 46.3895 | 249 | 18 | 392 | 343 | 331 | 96.5015 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.8403 | 94.5137 | 52.9086 | 74.2327 | 379 | 22 | 382 | 340 | 307 | 90.2941 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.8262 | 71.8519 | 64.2276 | 75.9766 | 97 | 38 | 79 | 44 | 37 | 84.0909 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.8201 | 66.2162 | 69.5035 | 79.0490 | 98 | 50 | 98 | 43 | 39 | 90.6977 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.7973 | 53.7975 | 91.6468 | 94.9895 | 765 | 657 | 768 | 70 | 16 | 22.8571 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.7966 | 86.9565 | 55.5556 | 81.0526 | 20 | 3 | 20 | 16 | 11 | 68.7500 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 67.7966 | 57.1429 | 83.3333 | 98.1928 | 4 | 3 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | homalt | 67.7742 | 51.3761 | 99.5475 | 94.9738 | 224 | 212 | 220 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 67.7725 | 56.5217 | 84.6154 | 31.5789 | 13 | 10 | 11 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7648 | 90.3704 | 54.2056 | 47.4847 | 244 | 26 | 232 | 196 | 196 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| anovak-vg | INDEL | * | map_l250_m2_e0 | * | 67.7533 | 69.7885 | 65.8333 | 96.4399 | 231 | 100 | 237 | 123 | 63 | 51.2195 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 67.7487 | 63.3008 | 72.8688 | 42.9423 | 7015 | 4067 | 6975 | 2597 | 2576 | 99.1914 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 67.7466 | 98.0570 | 51.7501 | 74.5351 | 3028 | 60 | 3090 | 2881 | 75 | 2.6033 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | * | 67.7462 | 69.9700 | 65.6593 | 96.4861 | 233 | 100 | 239 | 125 | 63 | 50.4000 | |
| anovak-vg | INDEL | * | decoy | * | 67.7419 | 60.0000 | 77.7778 | 99.9553 | 6 | 4 | 7 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 67.7419 | 56.0000 | 85.7143 | 83.1325 | 14 | 11 | 12 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 67.7419 | 75.0000 | 61.7647 | 95.8231 | 21 | 7 | 21 | 13 | 4 | 30.7692 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.7419 | 51.2195 | 100.0000 | 45.5901 | 357 | 340 | 438 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.7419 | 60.5769 | 76.8293 | 73.2463 | 126 | 82 | 126 | 38 | 36 | 94.7368 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 67.7209 | 62.2222 | 74.2857 | 53.3333 | 28 | 17 | 26 | 9 | 6 | 66.6667 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | homalt | 67.7201 | 62.3701 | 74.0741 | 84.8315 | 300 | 181 | 300 | 105 | 92 | 87.6190 | |
| ckim-isaac | SNP | * | map_l100_m0_e0 | homalt | 67.7175 | 51.2048 | 99.9496 | 53.7128 | 5950 | 5670 | 5950 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.7132 | 76.4249 | 60.7843 | 87.7538 | 295 | 91 | 341 | 220 | 80 | 36.3636 | |