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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44051-44100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.2703 | 100.0000 | 54.1667 | 50.0000 | 13 | 0 | 13 | 11 | 7 | 63.6364 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | * | 70.2703 | 68.4211 | 72.2222 | 45.4545 | 13 | 6 | 13 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 70.2572 | 87.5000 | 58.6914 | 56.3300 | 7315 | 1045 | 7266 | 5114 | 4566 | 89.2843 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 70.2572 | 87.5000 | 58.6914 | 56.3300 | 7315 | 1045 | 7266 | 5114 | 4566 | 89.2843 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.2459 | 57.4713 | 90.3226 | 99.9104 | 50 | 37 | 56 | 6 | 3 | 50.0000 | |
| anovak-vg | INDEL | * | map_l125_m0_e0 | het | 70.2289 | 68.8245 | 71.6918 | 91.8286 | 404 | 183 | 428 | 169 | 55 | 32.5444 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 70.2222 | 65.2893 | 75.9615 | 65.2174 | 158 | 84 | 158 | 50 | 50 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.2185 | 89.1892 | 57.9025 | 52.1104 | 1188 | 144 | 1176 | 855 | 827 | 96.7251 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | * | 70.2141 | 54.2827 | 99.3818 | 90.4903 | 11249 | 9474 | 11253 | 70 | 25 | 35.7143 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1987 | 60.9195 | 82.8125 | 80.6647 | 53 | 34 | 53 | 11 | 8 | 72.7273 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1987 | 60.9195 | 82.8125 | 82.7957 | 53 | 34 | 53 | 11 | 5 | 45.4545 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 70.1923 | 90.1235 | 57.4803 | 74.8016 | 73 | 8 | 73 | 54 | 51 | 94.4444 | |
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | * | 70.1902 | 54.3480 | 99.0678 | 87.5048 | 15943 | 13392 | 15941 | 150 | 4 | 2.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 70.1864 | 58.1267 | 88.5602 | 59.5371 | 1266 | 912 | 1347 | 174 | 129 | 74.1379 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 70.1834 | 63.2184 | 78.8732 | 73.6059 | 55 | 32 | 56 | 15 | 14 | 93.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | homalt | 70.1754 | 54.0541 | 100.0000 | 79.5396 | 80 | 68 | 80 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 70.1754 | 54.0541 | 100.0000 | 66.6667 | 20 | 17 | 20 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.1754 | 62.5000 | 80.0000 | 99.4253 | 5 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | segdup | * | 70.1754 | 62.8272 | 79.4702 | 93.2348 | 120 | 71 | 120 | 31 | 23 | 74.1935 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.1754 | 74.0741 | 66.6667 | 97.0874 | 20 | 7 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1745 | 56.1567 | 93.5185 | 58.4615 | 301 | 235 | 303 | 21 | 15 | 71.4286 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 70.1721 | 68.3616 | 72.0812 | 51.2376 | 121 | 56 | 142 | 55 | 50 | 90.9091 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 70.1659 | 88.4506 | 58.1458 | 66.8417 | 2175 | 284 | 2791 | 2009 | 225 | 11.1996 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | * | 70.1414 | 54.3558 | 98.8482 | 87.4638 | 17851 | 14990 | 17850 | 208 | 2 | 0.9615 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | het | 70.1405 | 54.9550 | 96.9231 | 97.0865 | 61 | 50 | 63 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 70.1373 | 58.7236 | 87.0583 | 47.6620 | 6082 | 4275 | 6061 | 901 | 793 | 88.0133 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.1319 | 59.4340 | 85.5263 | 73.7024 | 63 | 43 | 65 | 11 | 7 | 63.6364 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | homalt | 70.1299 | 54.5455 | 98.1818 | 84.2632 | 108 | 90 | 108 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 70.1273 | 67.6890 | 72.7479 | 71.4311 | 3465 | 1654 | 3529 | 1322 | 311 | 23.5250 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 70.1195 | 57.8947 | 88.8889 | 87.5000 | 11 | 8 | 8 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 70.1173 | 56.6230 | 92.0561 | 70.3396 | 389 | 298 | 394 | 34 | 20 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 70.1135 | 58.5834 | 87.2943 | 32.4261 | 3358 | 2374 | 19787 | 2880 | 2850 | 98.9583 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 70.1122 | 60.5452 | 83.2700 | 54.5769 | 422 | 275 | 438 | 88 | 86 | 97.7273 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.1097 | 58.8235 | 86.7550 | 74.5791 | 30 | 21 | 131 | 20 | 8 | 40.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | het | 70.0891 | 88.5246 | 58.0087 | 80.0690 | 54 | 7 | 134 | 97 | 79 | 81.4433 | |
| ckim-isaac | SNP | * | map_l150_m1_e0 | * | 70.0877 | 54.0364 | 99.7046 | 76.2708 | 16540 | 14069 | 16541 | 49 | 12 | 24.4898 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | * | 70.0796 | 54.1244 | 99.3737 | 90.4802 | 11102 | 9410 | 11106 | 70 | 25 | 35.7143 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 70.0793 | 54.1899 | 99.1525 | 26.2500 | 97 | 82 | 117 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 70.0566 | 57.5000 | 89.6296 | 82.8897 | 115 | 85 | 121 | 14 | 5 | 35.7143 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | het | 70.0428 | 89.8305 | 57.3991 | 79.1978 | 53 | 6 | 128 | 95 | 77 | 81.0526 | |
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | homalt | 70.0419 | 53.9078 | 99.9587 | 78.1072 | 2421 | 2070 | 2421 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | * | 70.0357 | 66.4337 | 74.0506 | 91.7565 | 3042 | 1537 | 3042 | 1066 | 196 | 18.3865 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | * | 70.0206 | 64.5902 | 76.4479 | 84.8980 | 197 | 108 | 198 | 61 | 55 | 90.1639 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 70.0058 | 58.6077 | 86.9078 | 48.1851 | 6070 | 4287 | 6054 | 912 | 765 | 83.8816 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.0000 | 91.3043 | 56.7568 | 95.0634 | 42 | 4 | 42 | 32 | 22 | 68.7500 | |