PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43651-43700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l150_m2_e0 | * | 71.6038 | 55.9659 | 99.3695 | 96.1005 | 788 | 620 | 788 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.5972 | 91.9862 | 58.6068 | 39.8738 | 9573 | 834 | 9608 | 6786 | 6745 | 99.3958 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | het | 71.5939 | 64.0625 | 81.1321 | 82.2742 | 41 | 23 | 43 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | * | het | 71.5920 | 95.0364 | 57.4257 | 53.1216 | 9535 | 498 | 9512 | 7052 | 6790 | 96.2847 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.5901 | 79.0706 | 65.4026 | 31.3787 | 2161 | 572 | 5036 | 2664 | 2476 | 92.9429 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | het | 71.5812 | 55.9018 | 99.4848 | 80.5969 | 4054 | 3198 | 4055 | 21 | 6 | 28.5714 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 71.5778 | 68.2094 | 75.2961 | 64.2035 | 899 | 419 | 890 | 292 | 290 | 99.3151 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.5746 | 78.1250 | 66.0377 | 64.7450 | 225 | 63 | 210 | 108 | 106 | 98.1481 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | het | 71.5733 | 55.9315 | 99.3606 | 92.7084 | 3885 | 3061 | 3885 | 25 | 5 | 20.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | het | 71.5668 | 56.3476 | 98.0495 | 94.3303 | 4474 | 3466 | 4474 | 89 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | homalt | 71.5666 | 73.3945 | 69.8276 | 95.2322 | 80 | 29 | 81 | 35 | 32 | 91.4286 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 71.5596 | 75.0000 | 68.4211 | 65.4545 | 39 | 13 | 39 | 18 | 18 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 71.5596 | 68.4211 | 75.0000 | 82.8571 | 13 | 6 | 9 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | * | 71.5536 | 66.2145 | 77.8293 | 58.1077 | 3173 | 1619 | 3191 | 909 | 871 | 95.8196 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.5265 | 61.2613 | 85.9244 | 78.5005 | 408 | 258 | 409 | 67 | 27 | 40.2985 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.5265 | 61.2613 | 85.9244 | 78.5005 | 408 | 258 | 409 | 67 | 27 | 40.2985 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | homalt | 71.5194 | 65.9516 | 78.1139 | 49.8226 | 5964 | 3079 | 5964 | 1671 | 1585 | 94.8534 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | het | 71.5152 | 65.2695 | 79.0828 | 84.9798 | 4796 | 2552 | 4794 | 1268 | 52 | 4.1010 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 71.5090 | 85.4985 | 61.4537 | 75.3529 | 566 | 96 | 558 | 350 | 286 | 81.7143 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e0 | homalt | 71.5076 | 67.7588 | 75.6955 | 81.9979 | 517 | 246 | 517 | 166 | 143 | 86.1446 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | * | 71.5037 | 71.4286 | 71.5789 | 85.3395 | 90 | 36 | 136 | 54 | 37 | 68.5185 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | het | 71.4817 | 86.2595 | 61.0268 | 91.9453 | 1695 | 270 | 1688 | 1078 | 256 | 23.7477 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 71.4799 | 62.8596 | 82.8402 | 34.4961 | 743 | 439 | 140 | 29 | 29 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | het | 71.4516 | 57.0142 | 95.6803 | 75.8729 | 443 | 334 | 443 | 20 | 12 | 60.0000 | |
| ckim-gatk | SNP | ti | map_l250_m2_e1 | * | 71.4464 | 56.3436 | 97.6109 | 96.1177 | 2860 | 2216 | 2860 | 70 | 9 | 12.8571 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.9925 | 5 | 4 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 88.8889 | 59.7015 | 47.6562 | 40 | 5 | 40 | 27 | 26 | 96.2963 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 71.4286 | 62.5000 | 83.3333 | 99.5506 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.3380 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.4127 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 71.4286 | 62.5000 | 83.3333 | 62.5000 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 55.5556 | 100.0000 | 89.7959 | 5 | 4 | 5 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 71.4286 | 83.3333 | 62.5000 | 81.3953 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 71.4286 | 83.3333 | 62.5000 | 83.3333 | 5 | 1 | 5 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 89.7959 | 5 | 4 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 98.6577 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.7207 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m0_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7320 | 5 | 4 | 10 | 0 | 0 | ||