PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 72.3100 | 56.8934 | 99.1870 | 55.0110 | 619 | 469 | 610 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.3083 | 81.8625 | 64.7512 | 68.9679 | 2013 | 446 | 2017 | 1098 | 1086 | 98.9071 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.3074 | 65.1007 | 81.3084 | 71.2366 | 97 | 52 | 87 | 20 | 14 | 70.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.3054 | 87.8570 | 61.4314 | 34.0186 | 6367 | 880 | 6309 | 3961 | 3654 | 92.2494 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | het | 72.3037 | 95.0301 | 58.3494 | 71.4553 | 3002 | 157 | 3026 | 2160 | 1899 | 87.9167 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 72.3005 | 66.3793 | 79.3814 | 88.9647 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | het | 72.2999 | 57.0570 | 98.6561 | 56.4180 | 17472 | 13150 | 17472 | 238 | 9 | 3.7815 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | * | 72.2938 | 57.9068 | 96.1929 | 69.4455 | 758 | 551 | 758 | 30 | 22 | 73.3333 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.2900 | 56.6125 | 99.9759 | 78.8887 | 4148 | 3179 | 4148 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 72.2892 | 62.5000 | 85.7143 | 97.4729 | 5 | 3 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_siren | * | 72.2865 | 56.6449 | 99.8618 | 75.5276 | 26017 | 19913 | 26011 | 36 | 12 | 33.3333 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | het | 72.2766 | 81.9820 | 64.6259 | 95.9781 | 91 | 20 | 95 | 52 | 22 | 42.3077 | |
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | * | 72.2501 | 57.4634 | 97.2832 | 92.5200 | 6914 | 5118 | 6911 | 193 | 26 | 13.4715 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.2480 | 83.2661 | 63.8051 | 90.8950 | 826 | 166 | 825 | 468 | 9 | 1.9231 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | * | 72.2467 | 70.6897 | 73.8739 | 87.7212 | 82 | 34 | 82 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | * | 72.2467 | 70.6897 | 73.8739 | 87.9870 | 82 | 34 | 82 | 29 | 19 | 65.5172 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2413 | 99.3100 | 56.7681 | 68.0924 | 2159 | 15 | 2164 | 1648 | 10 | 0.6068 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | het | 72.2384 | 86.6323 | 61.9461 | 92.2704 | 2858 | 441 | 2852 | 1752 | 393 | 22.4315 | |
| anovak-vg | INDEL | * | map_l100_m1_e0 | * | 72.2354 | 72.6157 | 71.8590 | 84.0163 | 2604 | 982 | 2671 | 1046 | 628 | 60.0382 | |
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | * | 72.2268 | 57.5050 | 97.0803 | 92.6384 | 6919 | 5113 | 6916 | 208 | 23 | 11.0577 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2264 | 69.9029 | 74.7097 | 69.5601 | 576 | 248 | 579 | 196 | 192 | 97.9592 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2252 | 97.0052 | 57.5294 | 65.0968 | 13345 | 412 | 13375 | 9874 | 9432 | 95.5236 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2252 | 97.0052 | 57.5294 | 65.0968 | 13345 | 412 | 13375 | 9874 | 9432 | 95.5236 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2241 | 56.7961 | 99.1597 | 58.2456 | 117 | 89 | 118 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.2230 | 56.8228 | 99.0741 | 25.0000 | 279 | 212 | 107 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 72.2222 | 65.0000 | 81.2500 | 99.5143 | 13 | 7 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | * | 72.2222 | 73.5849 | 70.9091 | 91.2141 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.2222 | 56.5217 | 100.0000 | 72.3404 | 13 | 10 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | hetalt | 72.2222 | 56.5217 | 100.0000 | 95.3556 | 13 | 10 | 32 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.2222 | 56.5217 | 100.0000 | 76.0000 | 13 | 10 | 6 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m2_e1 | * | 72.2208 | 72.4441 | 71.9990 | 84.9008 | 2721 | 1035 | 2795 | 1087 | 655 | 60.2576 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.2144 | 57.9892 | 95.6871 | 78.8764 | 2261 | 1638 | 2263 | 102 | 21 | 20.5882 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | * | 72.2095 | 59.9657 | 90.7360 | 51.7425 | 43417 | 28986 | 43409 | 4432 | 3924 | 88.5379 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | het | 72.2025 | 57.8759 | 95.9554 | 96.7153 | 2752 | 2003 | 2752 | 116 | 9 | 7.7586 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.1995 | 97.7700 | 57.2314 | 91.8059 | 833 | 19 | 831 | 621 | 50 | 8.0515 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.1992 | 56.8627 | 98.8636 | 64.0816 | 87 | 66 | 87 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.1859 | 74.1259 | 70.3448 | 95.1146 | 106 | 37 | 102 | 43 | 11 | 25.5814 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | * | 72.1859 | 56.5571 | 99.7506 | 77.5984 | 11601 | 8911 | 11601 | 29 | 5 | 17.2414 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | * | 72.1848 | 56.5603 | 99.7362 | 77.6680 | 11721 | 9002 | 11721 | 31 | 7 | 22.5806 | |
| ckim-isaac | SNP | ti | map_l125_m0_e0 | * | 72.1772 | 56.5507 | 99.7374 | 74.7461 | 7217 | 5545 | 7217 | 19 | 4 | 21.0526 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 72.1649 | 57.3770 | 97.2222 | 62.8866 | 35 | 26 | 35 | 1 | 1 | 100.0000 | |