PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43251-43300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.7749 | 91.8182 | 60.2740 | 84.1649 | 101 | 9 | 88 | 58 | 16 | 27.5862 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | * | 72.7717 | 57.9767 | 97.7049 | 93.3158 | 298 | 216 | 298 | 7 | 2 | 28.5714 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 72.7674 | 63.8298 | 84.6154 | 79.0323 | 30 | 17 | 33 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | * | 72.7673 | 60.4532 | 91.3812 | 78.4780 | 827 | 541 | 827 | 78 | 68 | 87.1795 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 72.7559 | 58.4625 | 96.3002 | 76.5890 | 3696 | 2626 | 3696 | 142 | 55 | 38.7324 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 72.7559 | 58.4625 | 96.3002 | 76.5890 | 3696 | 2626 | 3696 | 142 | 55 | 38.7324 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | * | 72.7472 | 67.2954 | 79.1602 | 52.2024 | 3568 | 1734 | 3582 | 943 | 676 | 71.6861 | |
| ckim-gatk | SNP | tv | map_l250_m2_e0 | het | 72.7389 | 58.8660 | 95.1667 | 96.8726 | 1142 | 798 | 1142 | 58 | 1 | 1.7241 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | * | 72.7370 | 60.6281 | 90.8897 | 55.5979 | 44843 | 29121 | 44835 | 4494 | 3956 | 88.0285 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.7369 | 58.3764 | 96.4677 | 87.8568 | 791 | 564 | 792 | 29 | 21 | 72.4138 | |
| gduggal-bwaplat | SNP | tv | map_l150_m2_e0 | het | 72.7336 | 57.3635 | 99.3551 | 93.0443 | 4160 | 3092 | 4160 | 27 | 5 | 18.5185 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | het | 72.7287 | 66.8410 | 79.7539 | 83.7508 | 12911 | 6405 | 12897 | 3274 | 108 | 3.2987 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.7480 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 94.2029 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.0000 | 8 | 6 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3607 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.5507 | 4 | 3 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 72.7273 | 66.6667 | 80.0000 | 99.6003 | 8 | 4 | 8 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.7273 | 85.7143 | 63.1579 | 96.7438 | 24 | 4 | 24 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 97.9381 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.1982 | 4 | 3 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 91.4286 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6170 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6842 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 91.2281 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.7273 | 70.5882 | 75.0000 | 97.7654 | 12 | 5 | 12 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | C1_5 | * | hetalt | 72.7273 | 100.0000 | 57.1429 | 96.7890 | 1 | 0 | 8 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.7273 | 59.2593 | 94.1176 | 90.7609 | 16 | 11 | 16 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 72.7273 | 100.0000 | 57.1429 | 99.4996 | 4 | 0 | 4 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e0 | het | 72.7273 | 75.0000 | 70.5882 | 91.4573 | 12 | 4 | 12 | 5 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | het | 72.7273 | 75.0000 | 70.5882 | 91.7476 | 12 | 4 | 12 | 5 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | * | 72.7273 | 57.1429 | 100.0000 | 97.5155 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | * | decoy | het | 72.7273 | 66.6667 | 80.0000 | 99.9643 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 96.6102 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 95.1807 | 4 | 3 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | homalt | 72.7273 | 75.0000 | 70.5882 | 81.1111 | 9 | 3 | 12 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.3510 | 4 | 3 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.6879 | 4 | 3 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.7273 | 100.0000 | 57.1429 | 99.9868 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 72.7273 | 100.0000 | 57.1429 | 99.7676 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.7273 | 66.6667 | 80.0000 | 95.9514 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.0892 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 98.3696 | 4 | 3 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 77.3585 | 24 | 18 | 24 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 72.7273 | 57.1429 | 100.0000 | 27.0270 | 28 | 21 | 27 | 0 | 0 | ||