PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43101-43150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | het | 73.2883 | 63.3333 | 86.9565 | 84.6667 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | het | 73.2883 | 63.3333 | 86.9565 | 84.9673 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | het | 73.2869 | 67.4862 | 80.1784 | 84.7273 | 13587 | 6546 | 13571 | 3355 | 112 | 3.3383 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 73.2802 | 81.7861 | 66.3768 | 81.5483 | 696 | 155 | 916 | 464 | 182 | 39.2241 | |
| ckim-isaac | SNP | * | map_l125_m1_e0 | * | 73.2800 | 57.9125 | 99.7492 | 70.8000 | 26250 | 19077 | 26252 | 66 | 16 | 24.2424 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.2776 | 67.1436 | 80.6452 | 54.3490 | 2675 | 1309 | 2675 | 642 | 605 | 94.2368 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 73.2771 | 59.8485 | 94.4751 | 88.1311 | 79 | 53 | 171 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | het | 73.2740 | 70.9580 | 75.7464 | 88.9861 | 1637 | 670 | 1649 | 528 | 311 | 58.9015 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | het | 73.2695 | 94.4056 | 59.8662 | 94.2393 | 540 | 32 | 537 | 360 | 2 | 0.5556 | |
| gduggal-bwaplat | SNP | * | map_l150_m1_e0 | het | 73.2588 | 58.0710 | 99.2046 | 91.8292 | 11217 | 8099 | 11225 | 90 | 26 | 28.8889 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 73.2558 | 69.2308 | 77.7778 | 95.6311 | 9 | 4 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_siren | * | 73.2509 | 67.3870 | 80.2326 | 79.8971 | 343 | 166 | 345 | 85 | 60 | 70.5882 | |
| ciseli-custom | SNP | * | HG002compoundhet | * | 73.2436 | 85.0050 | 64.3413 | 46.5864 | 21950 | 3872 | 21988 | 12186 | 1203 | 9.8720 | |
| ciseli-custom | INDEL | * | map_l100_m2_e1 | het | 73.2415 | 70.9774 | 75.6549 | 89.0075 | 1663 | 680 | 1675 | 539 | 319 | 59.1837 | |
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | het | 73.2414 | 85.0962 | 64.2857 | 79.7719 | 177 | 31 | 171 | 95 | 70 | 73.6842 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 73.2394 | 57.7778 | 100.0000 | 57.3770 | 26 | 19 | 26 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | homalt | 73.2296 | 57.7731 | 99.9773 | 80.4374 | 4400 | 3216 | 4400 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.2187 | 58.7771 | 97.0684 | 92.5467 | 298 | 209 | 298 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 73.2143 | 71.9298 | 74.5455 | 99.3650 | 41 | 16 | 41 | 14 | 6 | 42.8571 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.2113 | 82.3308 | 65.9106 | 63.8478 | 1752 | 376 | 1947 | 1007 | 294 | 29.1956 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 73.2107 | 79.5963 | 67.7737 | 81.2197 | 1104 | 283 | 1102 | 524 | 4 | 0.7634 | |
| ciseli-custom | INDEL | D16_PLUS | * | het | 73.2078 | 63.1529 | 87.0708 | 54.9379 | 1995 | 1164 | 2054 | 305 | 262 | 85.9016 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.2002 | 89.9486 | 61.7099 | 71.3186 | 1226 | 137 | 1357 | 842 | 135 | 16.0333 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.1919 | 91.6667 | 60.9150 | 62.8898 | 1221 | 111 | 1225 | 786 | 754 | 95.9288 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | homalt | 73.1839 | 59.1304 | 96.0000 | 96.3262 | 68 | 47 | 96 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | * | 73.1779 | 57.8921 | 99.4316 | 88.1943 | 9272 | 6744 | 9272 | 53 | 13 | 24.5283 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 73.1707 | 71.4286 | 75.0000 | 37.5000 | 15 | 6 | 15 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 73.1707 | 75.0000 | 71.4286 | 95.5975 | 3 | 1 | 5 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.1672 | 58.9474 | 96.4286 | 75.9657 | 56 | 39 | 54 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | * | 73.1661 | 60.6683 | 92.1490 | 95.6157 | 2778 | 1801 | 2770 | 236 | 199 | 84.3220 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 73.1635 | 81.4815 | 66.3866 | 60.7261 | 88 | 20 | 158 | 80 | 21 | 26.2500 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.1615 | 86.6667 | 63.2979 | 89.1767 | 143 | 22 | 119 | 69 | 11 | 15.9420 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.1589 | 71.4116 | 74.9939 | 43.9770 | 22846 | 9146 | 33793 | 11268 | 11182 | 99.2368 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | homalt | 73.1572 | 72.2527 | 74.0845 | 79.6211 | 263 | 101 | 263 | 92 | 86 | 93.4783 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.1549 | 89.1170 | 62.0422 | 57.0748 | 434 | 53 | 559 | 342 | 258 | 75.4386 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.1459 | 90.3226 | 61.4583 | 85.1163 | 56 | 6 | 59 | 37 | 36 | 97.2973 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.1437 | 60.1120 | 93.3897 | 54.7163 | 3650 | 2422 | 3645 | 258 | 193 | 74.8062 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | homalt | 73.1394 | 57.6758 | 99.9324 | 81.1976 | 4437 | 3256 | 4437 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.1367 | 73.8749 | 72.4131 | 44.0488 | 4974 | 1759 | 7145 | 2722 | 2236 | 82.1455 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.1343 | 58.3082 | 98.0711 | 75.8578 | 965 | 690 | 966 | 19 | 6 | 31.5789 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.1293 | 57.7957 | 99.5370 | 81.0360 | 215 | 157 | 215 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.1236 | 61.8658 | 89.3899 | 45.9110 | 378 | 233 | 337 | 40 | 35 | 87.5000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.1222 | 57.8728 | 99.2832 | 78.7023 | 555 | 404 | 554 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 73.1196 | 89.0957 | 62.0019 | 58.7223 | 670 | 82 | 669 | 410 | 358 | 87.3171 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 73.1099 | 94.8597 | 59.4736 | 81.1920 | 13822 | 749 | 13965 | 9516 | 255 | 2.6797 | |