PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43001-43050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.5068 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 73.6842 | 77.7778 | 70.0000 | 80.3922 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 73.6842 | 77.7778 | 70.0000 | 83.6066 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 73.6842 | 77.7778 | 70.0000 | 83.8710 | 7 | 2 | 7 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 73.6842 | 87.5000 | 63.6364 | 59.2593 | 7 | 1 | 7 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 73.6842 | 63.6364 | 87.5000 | 77.1429 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 73.6842 | 63.6364 | 87.5000 | 84.9057 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.6842 | 58.3333 | 100.0000 | 90.7080 | 21 | 15 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | het | 73.6724 | 66.1972 | 83.0508 | 83.1909 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | het | 73.6724 | 66.1972 | 83.0508 | 83.7912 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 73.6686 | 98.2908 | 58.9111 | 74.8889 | 4773 | 83 | 4826 | 3366 | 126 | 3.7433 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | homalt | 73.6570 | 58.2993 | 100.0000 | 74.6090 | 5423 | 3879 | 5422 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.6558 | 85.1238 | 64.9109 | 67.0798 | 3439 | 601 | 3241 | 1752 | 1680 | 95.8904 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.6476 | 94.3083 | 60.4126 | 87.0492 | 1193 | 72 | 1230 | 806 | 74 | 9.1811 | |
| gduggal-bwavard | INDEL | D6_15 | * | het | 73.6436 | 98.1194 | 58.9409 | 57.7838 | 11374 | 218 | 11286 | 7862 | 7644 | 97.2272 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.6413 | 72.8495 | 74.4505 | 79.6193 | 271 | 101 | 271 | 93 | 87 | 93.5484 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | het | 73.6293 | 75.8333 | 71.5498 | 53.1509 | 2366 | 754 | 2867 | 1140 | 832 | 72.9825 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.6289 | 89.6552 | 62.4633 | 66.7479 | 416 | 48 | 426 | 256 | 253 | 98.8281 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m1_e0 | het | 73.6223 | 58.5965 | 99.0119 | 96.3513 | 501 | 354 | 501 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.6158 | 59.0525 | 97.7135 | 42.8517 | 1608 | 1115 | 1453 | 34 | 29 | 85.2941 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | homalt | 73.6061 | 58.5465 | 99.0960 | 88.7560 | 1442 | 1021 | 1425 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.6043 | 64.1917 | 86.2515 | 56.0661 | 1366 | 762 | 1468 | 234 | 231 | 98.7179 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.5901 | 72.3684 | 74.8538 | 88.1906 | 110 | 42 | 128 | 43 | 3 | 6.9767 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | * | 73.5756 | 61.3876 | 91.8021 | 54.4848 | 30056 | 18905 | 30056 | 2684 | 2362 | 88.0030 | |
| ciseli-custom | SNP | tv | map_l250_m0_e0 | homalt | 73.5751 | 73.5751 | 73.5751 | 93.4487 | 142 | 51 | 142 | 51 | 33 | 64.7059 | |
| ciseli-custom | SNP | tv | tech_badpromoters | het | 73.5632 | 96.9697 | 59.2593 | 50.0000 | 32 | 1 | 32 | 22 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 73.5605 | 66.5605 | 82.2059 | 36.1952 | 627 | 315 | 2236 | 484 | 477 | 98.5537 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.5572 | 58.5593 | 98.8827 | 38.1693 | 756 | 535 | 708 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | homalt | 73.5557 | 58.3979 | 99.3407 | 81.3295 | 452 | 322 | 452 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | homalt | 73.5533 | 99.1254 | 58.4695 | 77.3735 | 680 | 6 | 680 | 483 | 480 | 99.3789 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | homalt | 73.5296 | 58.1398 | 100.0000 | 74.6665 | 5357 | 3857 | 5356 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 76.6355 | 25 | 18 | 25 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.5287 | 71.5370 | 75.6345 | 65.0089 | 377 | 150 | 298 | 96 | 96 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | * | 73.5260 | 73.7864 | 73.2673 | 91.6529 | 76 | 27 | 74 | 27 | 20 | 74.0741 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.5213 | 72.9508 | 74.1007 | 51.5679 | 89 | 33 | 103 | 36 | 31 | 86.1111 | |
| ghariani-varprowl | INDEL | D6_15 | * | het | 73.5164 | 97.8175 | 58.8869 | 57.8444 | 11339 | 253 | 11364 | 7934 | 7830 | 98.6892 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.5160 | 59.0220 | 97.4456 | 46.9644 | 2257 | 1567 | 2060 | 54 | 42 | 77.7778 | |
| ciseli-custom | INDEL | I1_5 | map_siren | het | 73.5105 | 78.9411 | 68.7790 | 81.4258 | 1327 | 354 | 1335 | 606 | 517 | 85.3135 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.4894 | 61.2085 | 91.9355 | 34.5468 | 1013 | 642 | 1653 | 145 | 143 | 98.6207 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.4853 | 92.4528 | 60.9756 | 70.1818 | 49 | 4 | 50 | 32 | 22 | 68.7500 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | homalt | 73.4760 | 59.4828 | 96.0784 | 96.3480 | 69 | 47 | 98 | 4 | 1 | 25.0000 | |