PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42951-43000 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l150_m1_e0 | het | 73.8384 | 68.2296 | 80.4520 | 83.6682 | 8440 | 3930 | 8437 | 2050 | 62 | 3.0244 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | het | 73.8307 | 99.1803 | 58.8015 | 95.5890 | 121 | 1 | 157 | 110 | 17 | 15.4545 | |
| cchapple-custom | INDEL | D1_5 | HG002compoundhet | homalt | 73.8232 | 98.6254 | 58.9888 | 82.3150 | 287 | 4 | 210 | 146 | 141 | 96.5753 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.8152 | 89.0909 | 63.0112 | 55.9378 | 343 | 42 | 339 | 199 | 180 | 90.4523 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.8072 | 96.5392 | 59.7403 | 70.7317 | 530 | 19 | 552 | 372 | 31 | 8.3333 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.8028 | 60.1852 | 95.3846 | 71.2389 | 65 | 43 | 62 | 3 | 2 | 66.6667 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | het | 73.7997 | 61.6049 | 92.0141 | 94.1071 | 3140 | 1957 | 3134 | 272 | 231 | 84.9265 | |
| ckim-isaac | SNP | * | map_l125_m2_e1 | * | 73.7959 | 58.5590 | 99.7510 | 72.8548 | 27641 | 19561 | 27643 | 69 | 17 | 24.6377 | |
| ckim-isaac | SNP | * | map_l150_m1_e0 | het | 73.7957 | 58.6094 | 99.6041 | 78.9632 | 11321 | 7995 | 11322 | 45 | 8 | 17.7778 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7913 | 59.3427 | 97.5400 | 44.2387 | 632 | 433 | 793 | 20 | 13 | 65.0000 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | het | 73.7898 | 70.2842 | 77.6634 | 67.6709 | 12784 | 5405 | 12976 | 3732 | 123 | 3.2958 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.7885 | 60.4651 | 94.6429 | 73.7089 | 52 | 34 | 53 | 3 | 2 | 66.6667 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | * | 73.7873 | 61.6490 | 91.8775 | 54.5530 | 30507 | 18978 | 30507 | 2697 | 2372 | 87.9496 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.7864 | 82.6087 | 66.6667 | 70.8738 | 19 | 4 | 20 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 73.7841 | 58.5687 | 99.6795 | 89.4166 | 311 | 220 | 311 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.7836 | 58.7520 | 99.1512 | 28.6930 | 4011 | 2816 | 3738 | 32 | 26 | 81.2500 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.7801 | 62.4350 | 90.1639 | 54.2729 | 600 | 361 | 550 | 60 | 48 | 80.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.7796 | 66.9983 | 82.0883 | 30.1926 | 404 | 199 | 1934 | 422 | 418 | 99.0521 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.7795 | 99.2361 | 58.7171 | 69.2191 | 1429 | 11 | 1428 | 1004 | 7 | 0.6972 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7755 | 59.7109 | 96.5075 | 47.3586 | 2189 | 1477 | 2183 | 79 | 55 | 69.6203 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 73.7705 | 60.1604 | 95.3390 | 57.0128 | 225 | 149 | 225 | 11 | 10 | 90.9091 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e0 | het | 73.7629 | 59.8383 | 96.1336 | 96.8561 | 3108 | 2086 | 3108 | 125 | 9 | 7.2000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | het | 73.7430 | 66.6667 | 82.5000 | 83.6735 | 32 | 16 | 33 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | HG002complexvar | hetalt | 73.7418 | 73.4647 | 74.0210 | 78.5933 | 1268 | 458 | 775 | 272 | 170 | 62.5000 | |
| ckim-isaac | SNP | * | map_l125_m2_e0 | * | 73.7324 | 58.4787 | 99.7518 | 72.8403 | 27323 | 19400 | 27325 | 68 | 16 | 23.5294 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 73.7322 | 58.7029 | 99.1053 | 30.0313 | 4752 | 3343 | 4431 | 40 | 34 | 85.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 73.7321 | 76.6917 | 70.9924 | 82.6490 | 102 | 31 | 93 | 38 | 38 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 76.2195 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 77.3256 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 73.7279 | 98.8858 | 58.7748 | 45.3888 | 355 | 4 | 355 | 249 | 247 | 99.1968 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.7262 | 74.1156 | 73.3408 | 74.2090 | 70000 | 24447 | 70171 | 25507 | 16983 | 66.5817 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.6947 | 65.2837 | 84.5936 | 37.0238 | 771 | 410 | 895 | 163 | 163 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 73.6851 | 63.7615 | 87.2671 | 74.3426 | 278 | 158 | 281 | 41 | 15 | 36.5854 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.6842 | 58.3333 | 100.0000 | 85.2941 | 14 | 10 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 73.6842 | 58.3333 | 100.0000 | 69.5652 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 73.6842 | 58.3333 | 100.0000 | 77.4194 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 73.6842 | 100.0000 | 58.3333 | 95.6364 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 73.6842 | 100.0000 | 58.3333 | 95.1417 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 73.6842 | 58.3333 | 100.0000 | 50.0000 | 7 | 5 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | * | 73.6842 | 73.6842 | 73.6842 | 48.6486 | 14 | 5 | 14 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.6842 | 82.3529 | 66.6667 | 96.9741 | 14 | 3 | 14 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | homalt | 73.6842 | 58.3333 | 100.0000 | 85.4839 | 7 | 5 | 9 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 73.6842 | 70.0000 | 77.7778 | 99.4813 | 7 | 3 | 7 | 2 | 1 | 50.0000 | |