PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42701-42750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.6988 | 67.3913 | 83.7838 | 60.6383 | 31 | 15 | 31 | 6 | 6 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6885 | 60.8669 | 96.6314 | 96.6914 | 2008 | 1291 | 2008 | 70 | 9 | 12.8571 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 74.6835 | 90.0763 | 63.7838 | 87.1438 | 118 | 13 | 118 | 67 | 64 | 95.5224 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.6828 | 72.3465 | 77.1751 | 57.2642 | 1520 | 581 | 1437 | 425 | 403 | 94.8235 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 74.6805 | 73.6967 | 75.6909 | 58.8837 | 4962 | 1771 | 4957 | 1592 | 1522 | 95.6030 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | het | 74.6753 | 91.2698 | 63.1868 | 86.5683 | 115 | 11 | 115 | 67 | 64 | 95.5224 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.6740 | 88.1188 | 64.7887 | 95.5942 | 89 | 12 | 92 | 50 | 7 | 14.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | het | 74.6667 | 59.5745 | 100.0000 | 97.7162 | 28 | 19 | 28 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | segdup | * | 74.6667 | 59.5745 | 100.0000 | 95.0427 | 28 | 19 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l250_m2_e0 | het | 74.6630 | 63.8291 | 89.9265 | 96.4842 | 2077 | 1177 | 2080 | 233 | 195 | 83.6910 | |
| hfeng-pmm3 | INDEL | * | HG002compoundhet | homalt | 74.6579 | 99.4169 | 59.7721 | 77.4506 | 682 | 4 | 682 | 459 | 454 | 98.9107 | |
| anovak-vg | SNP | tv | HG002compoundhet | * | 74.6577 | 75.2101 | 74.1133 | 50.0629 | 6711 | 2212 | 7063 | 2467 | 1646 | 66.7207 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 74.6510 | 71.8045 | 77.7324 | 73.3424 | 1528 | 600 | 1522 | 436 | 398 | 91.2844 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 74.6483 | 60.2410 | 98.1132 | 32.9114 | 50 | 33 | 52 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 91.6435 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 74.6404 | 61.7021 | 94.4444 | 94.7674 | 29 | 18 | 17 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | HG002complexvar | * | 74.6372 | 70.9355 | 78.7466 | 57.5873 | 3761 | 1541 | 3757 | 1014 | 966 | 95.2663 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.6313 | 61.1111 | 95.8333 | 91.7241 | 22 | 14 | 23 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6274 | 60.7154 | 96.8101 | 96.8027 | 2003 | 1296 | 2003 | 66 | 8 | 12.1212 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | het | 74.6228 | 89.4737 | 64.0000 | 97.0449 | 17 | 2 | 16 | 9 | 1 | 11.1111 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | * | 74.6205 | 69.3798 | 80.7175 | 81.6461 | 179 | 79 | 180 | 43 | 33 | 76.7442 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | * | 74.6172 | 60.0897 | 98.4088 | 90.7075 | 804 | 534 | 804 | 13 | 5 | 38.4615 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | het | 74.6164 | 68.4639 | 81.9839 | 81.7497 | 7149 | 3293 | 7149 | 1571 | 62 | 3.9465 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | * | 74.6091 | 62.6419 | 92.2286 | 95.4856 | 4524 | 2698 | 4486 | 378 | 314 | 83.0688 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | het | 74.6025 | 60.2363 | 97.9675 | 92.7270 | 2651 | 1750 | 2651 | 55 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 74.5996 | 62.5114 | 92.4837 | 50.4052 | 1369 | 821 | 283 | 23 | 22 | 95.6522 | |
| gduggal-snapplat | INDEL | I1_5 | * | het | 74.5979 | 72.6661 | 76.6351 | 71.5717 | 57436 | 21605 | 58022 | 17690 | 370 | 2.0916 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 74.5911 | 64.9460 | 87.6005 | 39.3454 | 5234 | 2825 | 763 | 108 | 107 | 99.0741 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 74.5911 | 64.9460 | 87.6005 | 39.3454 | 5234 | 2825 | 763 | 108 | 107 | 99.0741 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 74.5902 | 87.5000 | 65.0000 | 88.2353 | 7 | 1 | 13 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 74.5876 | 79.0062 | 70.6370 | 92.2018 | 5438 | 1445 | 5456 | 2268 | 88 | 3.8801 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 74.5853 | 86.8721 | 65.3433 | 69.9161 | 761 | 115 | 609 | 323 | 321 | 99.3808 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | * | 74.5851 | 62.3719 | 92.7460 | 95.5643 | 3166 | 1910 | 3158 | 247 | 208 | 84.2105 | |
| gduggal-snapfb | INDEL | D6_15 | * | hetalt | 74.5835 | 65.2679 | 87.0010 | 49.2731 | 5335 | 2839 | 850 | 127 | 126 | 99.2126 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 74.5771 | 61.3208 | 95.1456 | 97.1594 | 65 | 41 | 98 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | het | 74.5562 | 59.6215 | 99.4737 | 96.5316 | 189 | 128 | 189 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 74.5401 | 60.5690 | 96.8890 | 74.8497 | 6728 | 4380 | 6727 | 216 | 42 | 19.4444 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.5342 | 62.5000 | 92.3077 | 80.9663 | 70 | 42 | 120 | 10 | 9 | 90.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.5342 | 66.6667 | 84.5070 | 97.7222 | 2 | 1 | 60 | 11 | 1 | 9.0909 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | het | 74.5328 | 60.6638 | 96.6226 | 96.6749 | 1974 | 1280 | 1974 | 69 | 9 | 13.0435 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | het | 74.5292 | 65.5594 | 86.3426 | 98.2078 | 375 | 197 | 373 | 59 | 42 | 71.1864 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | homalt | 74.5239 | 83.0769 | 67.5676 | 84.9389 | 54 | 11 | 75 | 36 | 33 | 91.6667 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 74.5124 | 79.7221 | 69.9419 | 60.7095 | 9982 | 2539 | 10713 | 4604 | 2731 | 59.3180 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 74.5086 | 80.7087 | 69.1932 | 71.0477 | 615 | 147 | 849 | 378 | 216 | 57.1429 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 74.4984 | 65.6955 | 86.0254 | 69.2922 | 1398 | 730 | 1422 | 231 | 214 | 92.6407 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 74.4949 | 59.8361 | 98.6667 | 81.4815 | 73 | 49 | 74 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | * | tech_badpromoters | * | 74.4828 | 71.0526 | 78.2609 | 53.6913 | 54 | 22 | 54 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4745 | 97.6378 | 60.1942 | 45.5026 | 124 | 3 | 124 | 82 | 82 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | het | 74.4705 | 60.5101 | 96.8043 | 96.7872 | 1969 | 1285 | 1969 | 65 | 8 | 12.3077 | |