PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42651-42700 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | map_l250_m1_e0 | * | 74.8997 | 81.6117 | 69.2079 | 91.2986 | 3737 | 842 | 3722 | 1656 | 368 | 22.2222 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 74.8992 | 68.5950 | 82.4793 | 92.0478 | 498 | 228 | 499 | 106 | 22 | 20.7547 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | het | 74.8930 | 76.0223 | 73.7968 | 97.3622 | 409 | 129 | 414 | 147 | 3 | 2.0408 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | * | 74.8886 | 69.8182 | 80.7531 | 82.6560 | 192 | 83 | 193 | 46 | 35 | 76.0870 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | het | 74.8844 | 63.0388 | 92.2118 | 79.9750 | 1477 | 866 | 1480 | 125 | 73 | 58.4000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 74.8768 | 73.7864 | 76.0000 | 91.3420 | 76 | 27 | 76 | 24 | 21 | 87.5000 | |
| qzeng-custom | SNP | ti | map_l250_m2_e1 | het | 74.8760 | 64.0800 | 90.0468 | 96.4938 | 2114 | 1185 | 2117 | 234 | 196 | 83.7607 | |
| qzeng-custom | SNP | * | map_l250_m2_e1 | homalt | 74.8704 | 60.3017 | 98.7211 | 89.3099 | 1639 | 1079 | 1621 | 21 | 20 | 95.2381 | |
| anovak-vg | INDEL | * | * | homalt | 74.8405 | 92.1212 | 63.0190 | 50.1342 | 115310 | 9862 | 117434 | 68913 | 64807 | 94.0418 | |
| ckim-isaac | SNP | tv | map_l125_m2_e1 | het | 74.8404 | 59.9545 | 99.5595 | 75.8491 | 6327 | 4226 | 6329 | 28 | 7 | 25.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 74.8352 | 86.7069 | 65.8228 | 74.0520 | 574 | 88 | 572 | 297 | 264 | 88.8889 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | * | 74.8271 | 60.3197 | 98.5227 | 91.3700 | 868 | 571 | 867 | 13 | 5 | 38.4615 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | het | 74.8246 | 85.7367 | 66.3765 | 86.9328 | 4370 | 727 | 4347 | 2202 | 593 | 26.9301 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | het | 74.8225 | 76.6382 | 73.0908 | 51.0116 | 2421 | 738 | 2230 | 821 | 811 | 98.7820 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | het | 74.8173 | 62.7655 | 92.5973 | 79.8974 | 1448 | 859 | 1451 | 116 | 68 | 58.6207 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| ckim-isaac | SNP | ti | map_l125_m1_e0 | * | 74.8103 | 59.8330 | 99.7896 | 70.2803 | 17552 | 11783 | 17552 | 37 | 7 | 18.9189 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | * | 74.8018 | 60.2983 | 98.4919 | 91.3653 | 849 | 559 | 849 | 13 | 5 | 38.4615 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 74.7966 | 60.2857 | 98.5075 | 44.9315 | 211 | 139 | 198 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7922 | 62.5000 | 93.1034 | 51.7203 | 385 | 231 | 405 | 30 | 30 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| anovak-vg | INDEL | * | func_cds | het | 74.7761 | 69.6262 | 80.7487 | 43.8438 | 149 | 65 | 151 | 36 | 19 | 52.7778 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7720 | 59.7087 | 100.0000 | 57.0934 | 123 | 83 | 124 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002compoundhet | homalt | 74.7625 | 67.9300 | 83.1230 | 59.6178 | 466 | 220 | 527 | 107 | 96 | 89.7196 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | homalt | 74.7573 | 59.6899 | 100.0000 | 74.1176 | 154 | 104 | 154 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.7562 | 62.1622 | 93.7500 | 89.5879 | 46 | 28 | 45 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l100_m0_e0 | het | 74.7468 | 59.7757 | 99.7229 | 73.2042 | 4317 | 2905 | 4319 | 12 | 3 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l125_m2_e0 | het | 74.7458 | 59.8353 | 99.5540 | 75.8427 | 6248 | 4194 | 6250 | 28 | 7 | 25.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 74.7445 | 74.1265 | 75.3730 | 58.4574 | 14723 | 5139 | 14700 | 4803 | 4251 | 88.5072 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | het | 74.7394 | 68.6345 | 82.0365 | 81.7503 | 7243 | 3310 | 7243 | 1586 | 64 | 4.0353 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7354 | 78.9833 | 70.9211 | 58.2978 | 1041 | 277 | 1178 | 483 | 222 | 45.9627 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7342 | 66.9196 | 84.6154 | 62.9705 | 882 | 436 | 924 | 168 | 144 | 85.7143 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7337 | 62.6214 | 92.6554 | 54.8469 | 129 | 77 | 164 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 74.7331 | 75.0000 | 74.4681 | 58.4071 | 27 | 9 | 35 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 74.7296 | 60.6061 | 97.4359 | 66.9492 | 40 | 26 | 38 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | * | * | 74.7295 | 62.4588 | 93.0005 | 54.4140 | 3983 | 2394 | 3986 | 300 | 193 | 64.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | * | 74.7253 | 59.6491 | 100.0000 | 97.1536 | 68 | 46 | 68 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 74.7226 | 73.9078 | 75.5556 | 71.1230 | 609 | 215 | 612 | 198 | 191 | 96.4646 | |
| qzeng-custom | SNP | * | map_l250_m2_e0 | homalt | 74.7183 | 60.0894 | 98.7624 | 89.3086 | 1614 | 1072 | 1596 | 20 | 19 | 95.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 74.7126 | 62.5000 | 92.8571 | 77.0492 | 15 | 9 | 13 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | het | 74.7095 | 69.0476 | 81.3830 | 98.2825 | 145 | 65 | 153 | 35 | 5 | 14.2857 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.3844 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | * | 74.6989 | 60.0098 | 98.9100 | 84.8150 | 14703 | 9798 | 14700 | 162 | 1 | 0.6173 | |