PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42551-42600 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 91.6667 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.7368 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | homalt | 75.0000 | 90.0000 | 64.2857 | 93.2757 | 45 | 5 | 45 | 25 | 24 | 96.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 98.5612 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.7431 | 9 | 6 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 55.5556 | 3 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 75.0000 | 75.0000 | 75.0000 | 99.6201 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 80.0000 | 70.5882 | 91.0995 | 12 | 3 | 12 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5526 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5418 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.1203 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.4520 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4709 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002complexvar | * | 75.0000 | 85.7143 | 66.6667 | 74.4681 | 6 | 1 | 8 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 92.8058 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 93.6306 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 96.5909 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 96.8421 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.3392 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.5904 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.6378 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | * | 75.0000 | 60.0000 | 100.0000 | 97.8469 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | * | 75.0000 | 60.0000 | 100.0000 | 98.8971 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.0000 | 60.8696 | 97.6744 | 74.5562 | 42 | 27 | 42 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.3784 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.4155 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 98.8338 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | het | 75.0000 | 60.0000 | 100.0000 | 68.4211 | 6 | 4 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.0784 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2264 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 75.0000 | 75.0000 | 96.2617 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 60.0000 | 100.0000 | 99.6733 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | * | het | 75.0000 | 85.7143 | 66.6667 | 94.0945 | 6 | 1 | 10 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.0000 | 100.0000 | 60.0000 | 87.9679 | 1 | 0 | 27 | 18 | 11 | 61.1111 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 90.0000 | 64.2857 | 95.5056 | 18 | 2 | 18 | 10 | 2 | 20.0000 | |