PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42501-42550 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 81.2500 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 84.0000 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4545 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.5882 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 78.5714 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 78.5714 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 81.2500 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 87.5000 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 75.0000 | 60.0000 | 100.0000 | 88.0000 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 75.0000 | 66.6667 | 85.7143 | 78.7879 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 75.0000 | 66.6667 | 85.7143 | 80.5556 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 69.2308 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 74.1935 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.1390 | 6 | 0 | 6 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6795 | 3 | 2 | 3 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4424 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 97.5232 | 6 | 2 | 6 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.1739 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.2331 | 9 | 6 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 99.5863 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | func_cds | het | 75.0000 | 66.6667 | 85.7143 | 58.8235 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0843 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.4177 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 94.4444 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 94.5455 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6099 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 96.6443 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.1751 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.2376 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.1429 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5752 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 96.1832 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 96.2406 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.4286 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0620 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.3923 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4076 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 95.1691 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 98.2533 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 99.0354 | 3 | 2 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 99.0712 | 3 | 2 | 3 | 0 | 0 | ||