PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42151-42200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 75.8621 | 91.6667 | 64.7059 | 99.5499 | 11 | 1 | 11 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 75.8621 | 70.9677 | 81.4815 | 70.9677 | 22 | 9 | 22 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m0_e0 | het | 75.8621 | 62.2642 | 97.0588 | 98.4760 | 33 | 20 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | * | 75.8621 | 61.1111 | 100.0000 | 97.6242 | 11 | 7 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_siren | hetalt | 75.8621 | 61.1111 | 100.0000 | 87.2093 | 44 | 28 | 44 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 75.8621 | 73.3333 | 78.5714 | 96.3731 | 11 | 4 | 11 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.8621 | 61.1111 | 100.0000 | 90.0901 | 22 | 14 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.8613 | 83.4547 | 69.5344 | 53.8102 | 802 | 159 | 687 | 301 | 288 | 95.6811 | |
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | homalt | 75.8563 | 69.7595 | 83.1210 | 54.7550 | 203 | 88 | 261 | 53 | 49 | 92.4528 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.8539 | 63.8889 | 93.3333 | 73.2143 | 69 | 39 | 70 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 75.8531 | 61.6915 | 98.4536 | 88.1055 | 124 | 77 | 191 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | * | 75.8372 | 65.8610 | 89.3750 | 97.9118 | 218 | 113 | 286 | 34 | 17 | 50.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | * | 75.8315 | 61.2995 | 99.3947 | 87.0105 | 18548 | 11710 | 18555 | 113 | 34 | 30.0885 | |
| anovak-vg | SNP | ti | map_l250_m2_e1 | * | 75.8245 | 82.3089 | 70.2872 | 91.6096 | 4178 | 898 | 4161 | 1759 | 398 | 22.6265 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.8244 | 61.6505 | 98.4615 | 58.8608 | 127 | 79 | 128 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.8242 | 97.1831 | 62.1622 | 52.7660 | 69 | 2 | 69 | 42 | 42 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | * | 75.8227 | 61.1518 | 99.7549 | 67.3250 | 15461 | 9822 | 15464 | 38 | 12 | 31.5789 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.8133 | 61.0478 | 100.0000 | 40.6250 | 268 | 171 | 19 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_siren | het | 75.8046 | 83.5714 | 69.3587 | 81.7036 | 234 | 46 | 292 | 129 | 84 | 65.1163 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| ckim-isaac | SNP | tv | map_l100_m2_e0 | * | 75.7866 | 61.1033 | 99.7587 | 67.3111 | 15296 | 9737 | 15299 | 37 | 12 | 32.4324 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 75.7760 | 77.8397 | 73.8189 | 67.4300 | 37574 | 10697 | 51936 | 18420 | 13343 | 72.4376 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.7737 | 66.0714 | 88.8158 | 57.1831 | 407 | 209 | 405 | 51 | 47 | 92.1569 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 75.7686 | 61.6162 | 98.3607 | 87.4486 | 122 | 76 | 180 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | * | 75.7650 | 61.6780 | 98.1917 | 90.2709 | 544 | 338 | 543 | 10 | 2 | 20.0000 | |
| anovak-vg | SNP | ti | map_l250_m2_e0 | * | 75.7617 | 82.2684 | 70.2088 | 91.5692 | 4120 | 888 | 4103 | 1741 | 394 | 22.6307 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | * | 75.7576 | 60.9756 | 100.0000 | 96.7384 | 50 | 32 | 50 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.7559 | 79.7506 | 72.1424 | 75.3616 | 1087 | 276 | 1155 | 446 | 264 | 59.1928 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 75.7488 | 61.1544 | 99.4924 | 57.4514 | 392 | 249 | 392 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | map_l250_m2_e0 | * | 75.7461 | 64.0330 | 92.7037 | 95.4455 | 5049 | 2836 | 5006 | 394 | 328 | 83.2487 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.7444 | 68.4857 | 84.7242 | 61.9892 | 502 | 231 | 599 | 108 | 100 | 92.5926 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.7426 | 65.3846 | 90.0000 | 93.5691 | 17 | 9 | 18 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | ti | map_l150_m2_e1 | het | 75.7313 | 61.0680 | 99.6614 | 80.0450 | 7948 | 5067 | 7948 | 27 | 3 | 11.1111 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | * | 75.7295 | 61.1494 | 99.4393 | 94.2939 | 532 | 338 | 532 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.7282 | 95.1220 | 62.9032 | 93.1188 | 39 | 2 | 39 | 23 | 11 | 47.8261 | |
| anovak-vg | INDEL | * | HG002complexvar | homalt | 75.7278 | 94.2021 | 63.3115 | 49.8629 | 25460 | 1567 | 25940 | 15032 | 14199 | 94.4585 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 75.7234 | 65.8935 | 89.0004 | 54.7661 | 2301 | 1191 | 2306 | 285 | 284 | 99.6491 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.7194 | 61.1022 | 99.5294 | 32.2169 | 765 | 487 | 846 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | het | 75.7150 | 61.0434 | 99.6704 | 79.9741 | 7863 | 5018 | 7863 | 26 | 2 | 7.6923 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | het | 75.7065 | 81.4815 | 70.6960 | 83.7015 | 110 | 25 | 193 | 80 | 56 | 70.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.7026 | 69.8630 | 82.6075 | 47.3461 | 1377 | 594 | 3073 | 647 | 636 | 98.2998 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | * | 75.6960 | 71.3329 | 80.6276 | 65.0203 | 1172 | 471 | 1182 | 284 | 273 | 96.1268 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |