PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41351-41400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | het | 77.7778 | 100.0000 | 63.6364 | 54.1667 | 7 | 0 | 7 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 77.7778 | 70.0000 | 87.5000 | 99.6063 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | * | 77.7778 | 77.7778 | 77.7778 | 96.4000 | 14 | 4 | 14 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 77.7778 | 74.4681 | 81.3953 | 92.8453 | 35 | 12 | 35 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | het | 77.7778 | 100.0000 | 63.6364 | 62.0690 | 7 | 0 | 7 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 89.2857 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.1099 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 90.3226 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | * | 77.7778 | 70.0000 | 87.5000 | 99.9456 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 77.7778 | 93.3333 | 66.6667 | 95.8580 | 14 | 1 | 14 | 7 | 2 | 28.5714 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.7778 | 93.3333 | 66.6667 | 94.0000 | 14 | 1 | 14 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | HG002compoundhet | het | 77.7767 | 79.7346 | 75.9127 | 53.8008 | 3726 | 947 | 4346 | 1379 | 1030 | 74.6918 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.7614 | 75.7576 | 79.8742 | 91.5962 | 125 | 40 | 127 | 32 | 21 | 65.6250 | |
| ndellapenna-hhga | INDEL | D1_5 | * | hetalt | 77.7578 | 64.1093 | 98.7893 | 70.8854 | 6568 | 3677 | 6120 | 75 | 63 | 84.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.7563 | 75.0000 | 80.7229 | 62.2727 | 69 | 23 | 67 | 16 | 16 | 100.0000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | * | 77.7546 | 81.7199 | 74.1564 | 85.3644 | 6424 | 1437 | 6373 | 2221 | 611 | 27.5101 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.7525 | 64.8746 | 97.0093 | 45.7404 | 181 | 98 | 519 | 16 | 13 | 81.2500 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.7513 | 65.3494 | 95.9630 | 64.1921 | 2282 | 1210 | 2282 | 96 | 29 | 30.2083 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | * | 77.7498 | 91.2913 | 67.7067 | 95.6730 | 304 | 29 | 434 | 207 | 49 | 23.6715 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 77.7475 | 64.0656 | 98.8601 | 79.0638 | 2266 | 1271 | 2255 | 26 | 19 | 73.0769 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | * | 77.7410 | 73.0049 | 83.1343 | 80.5630 | 14152 | 5233 | 14132 | 2867 | 775 | 27.0317 | |
| anovak-vg | INDEL | D6_15 | HG002complexvar | het | 77.7392 | 75.0641 | 80.6119 | 50.1246 | 2342 | 778 | 2582 | 621 | 443 | 71.3366 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | hetalt | 77.7377 | 63.7887 | 99.4948 | 53.3255 | 16062 | 9118 | 16150 | 82 | 81 | 98.7805 | |
| mlin-fermikit | INDEL | * | * | hetalt | 77.7361 | 63.8348 | 99.3774 | 60.1130 | 16110 | 9127 | 16282 | 102 | 100 | 98.0392 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.7331 | 64.7163 | 97.3046 | 78.9683 | 365 | 199 | 361 | 10 | 6 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.7226 | 63.9247 | 99.1164 | 40.0903 | 3769 | 2127 | 3814 | 34 | 34 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.7226 | 63.9247 | 99.1164 | 40.0903 | 3769 | 2127 | 3814 | 34 | 34 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.7135 | 64.0275 | 98.8407 | 72.1806 | 5952 | 3344 | 5542 | 65 | 54 | 83.0769 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 77.7114 | 64.9157 | 96.7899 | 84.6384 | 1001 | 541 | 995 | 33 | 12 | 36.3636 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | * | 77.7114 | 74.4681 | 81.2500 | 92.1824 | 35 | 12 | 39 | 9 | 7 | 77.7778 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 77.7092 | 98.6486 | 64.1026 | 79.2920 | 73 | 1 | 75 | 42 | 35 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | het | 77.7080 | 80.2817 | 75.2941 | 89.6341 | 57 | 14 | 64 | 21 | 11 | 52.3810 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.7070 | 70.1149 | 87.1429 | 99.8944 | 61 | 26 | 61 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | * | 77.7005 | 91.2387 | 67.6609 | 95.5856 | 302 | 29 | 431 | 206 | 49 | 23.7864 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 77.6993 | 64.3836 | 97.9592 | 68.5897 | 47 | 26 | 48 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | * | 77.6978 | 64.0316 | 98.7805 | 90.5503 | 324 | 182 | 324 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 77.6923 | 63.9241 | 99.0196 | 81.1460 | 202 | 114 | 202 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 77.6919 | 72.9319 | 83.1165 | 45.6084 | 2689 | 998 | 2939 | 597 | 575 | 96.3149 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 77.6887 | 86.0465 | 70.8108 | 85.0746 | 222 | 36 | 262 | 108 | 10 | 9.2593 | |
| eyeh-varpipe | INDEL | I6_15 | * | homalt | 77.6886 | 84.0359 | 72.2329 | 34.4939 | 5243 | 996 | 5273 | 2027 | 2012 | 99.2600 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.6790 | 63.6186 | 99.7178 | 29.4964 | 4564 | 2610 | 4593 | 13 | 13 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m1_e0 | * | 77.6786 | 74.3590 | 81.3084 | 89.7706 | 87 | 30 | 87 | 20 | 19 | 95.0000 | |