PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39951-40000 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0707 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4959 | 6 | 3 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1818 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4962 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 93.1818 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 89.2857 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.1039 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.9459 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 99.3671 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.0263 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.6825 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.6027 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.6898 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 66.6667 | 100.0000 | 97.1591 | 6 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9611 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 80.0000 | 80.0000 | 99.5795 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 100.0000 | 66.6667 | 96.5909 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | decoy | * | 80.0000 | 66.6667 | 100.0000 | 97.7401 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 98.2301 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5185 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.0892 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.8919 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.5318 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 95.5556 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.2025 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 86.9565 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.1890 | 16 | 8 | 15 | 0 | 0 | ||