PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39551-39600 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | het | 81.0028 | 77.5920 | 84.7273 | 95.7225 | 232 | 67 | 233 | 42 | 1 | 2.3810 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.9979 | 73.8865 | 89.6241 | 43.4171 | 2903 | 1026 | 2885 | 334 | 316 | 94.6108 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 80.9979 | 69.0681 | 97.9094 | 73.8330 | 2809 | 1258 | 2810 | 60 | 52 | 86.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | * | 80.9978 | 79.3103 | 82.7586 | 95.3226 | 46 | 12 | 48 | 10 | 8 | 80.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.9919 | 72.4294 | 91.8503 | 55.9362 | 1923 | 732 | 2209 | 196 | 151 | 77.0408 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 80.9911 | 68.5015 | 99.0506 | 83.1197 | 224 | 103 | 313 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9908 | 72.0050 | 92.5390 | 89.7242 | 571 | 222 | 831 | 67 | 13 | 19.4030 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.9828 | 69.1181 | 97.7650 | 72.5426 | 12556 | 5610 | 12554 | 287 | 244 | 85.0174 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.9828 | 69.1181 | 97.7650 | 72.5426 | 12556 | 5610 | 12554 | 287 | 244 | 85.0174 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | het | 80.9816 | 79.2793 | 82.7586 | 97.8940 | 88 | 23 | 96 | 20 | 5 | 25.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 80.9816 | 75.0000 | 88.0000 | 96.8394 | 15 | 5 | 22 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.9810 | 69.4783 | 97.0481 | 57.6686 | 2397 | 1053 | 2400 | 73 | 9 | 12.3288 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.9804 | 79.5796 | 82.4314 | 68.2439 | 530 | 136 | 1112 | 237 | 115 | 48.5232 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.9804 | 79.5796 | 82.4314 | 68.2439 | 530 | 136 | 1112 | 237 | 115 | 48.5232 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.9804 | 74.1455 | 89.2034 | 78.7338 | 846 | 295 | 851 | 103 | 101 | 98.0583 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9787 | 82.6087 | 79.4118 | 94.2422 | 57 | 12 | 54 | 14 | 3 | 21.4286 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | het | 80.9783 | 77.6042 | 84.6591 | 95.8412 | 149 | 43 | 149 | 27 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.9710 | 68.2936 | 99.4281 | 31.4166 | 7584 | 3521 | 7649 | 44 | 44 | 100.0000 | |
| anovak-vg | SNP | tv | map_l125_m2_e1 | * | 80.9704 | 87.5908 | 75.2805 | 76.3445 | 14590 | 2067 | 14560 | 4781 | 1080 | 22.5894 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9684 | 93.9086 | 71.1625 | 61.2108 | 1110 | 72 | 1108 | 449 | 440 | 97.9955 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 80.9673 | 71.3450 | 93.5897 | 97.5788 | 122 | 49 | 146 | 10 | 9 | 90.0000 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | * | 80.9656 | 72.6869 | 91.3725 | 27.9246 | 6379 | 2397 | 7403 | 699 | 688 | 98.4263 | |
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | * | 80.9550 | 82.0565 | 79.8828 | 90.2159 | 407 | 89 | 409 | 103 | 43 | 41.7476 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | homalt | 80.9524 | 68.0000 | 100.0000 | 98.5650 | 17 | 8 | 19 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9524 | 70.8333 | 94.4444 | 73.9130 | 17 | 7 | 17 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.9438 | 72.3670 | 91.8269 | 61.8148 | 1333 | 509 | 1337 | 119 | 66 | 55.4622 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | homalt | 80.9434 | 78.5927 | 83.4390 | 87.8922 | 2111 | 575 | 2106 | 418 | 300 | 71.7703 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.9421 | 97.2812 | 69.3022 | 61.0030 | 10806 | 302 | 10816 | 4791 | 4241 | 88.5201 | |
| anovak-vg | SNP | ti | map_l100_m2_e1 | het | 80.9356 | 90.4328 | 73.2435 | 73.3025 | 27998 | 2962 | 27782 | 10149 | 2220 | 21.8741 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.9329 | 94.5455 | 70.7469 | 64.8688 | 312 | 18 | 341 | 141 | 126 | 89.3617 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 80.9251 | 78.3877 | 83.6323 | 72.4014 | 50506 | 13925 | 50171 | 9819 | 9240 | 94.1033 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.9241 | 70.7711 | 94.4782 | 66.0416 | 1707 | 705 | 1711 | 100 | 97 | 97.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.9237 | 76.2066 | 86.2632 | 43.6078 | 900 | 281 | 898 | 143 | 143 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.9217 | 68.6747 | 98.4848 | 30.5263 | 57 | 26 | 65 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 80.9211 | 77.9906 | 84.0804 | 49.2093 | 10751 | 3034 | 10748 | 2035 | 2023 | 99.4103 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | het | 80.9197 | 78.6420 | 83.3333 | 93.5255 | 637 | 173 | 640 | 128 | 3 | 2.3438 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.9173 | 71.6981 | 92.8571 | 63.4783 | 38 | 15 | 39 | 3 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l125_m2_e1 | het | 80.9165 | 68.7672 | 98.2798 | 89.9018 | 7257 | 3296 | 7256 | 127 | 1 | 0.7874 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 80.9161 | 72.4451 | 91.6304 | 55.0342 | 957 | 364 | 843 | 77 | 76 | 98.7013 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9130 | 78.6885 | 83.2669 | 93.4516 | 624 | 169 | 627 | 126 | 3 | 2.3810 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9122 | 68.7259 | 98.3516 | 52.7273 | 178 | 81 | 179 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.9033 | 83.4146 | 78.5388 | 83.2569 | 171 | 34 | 172 | 47 | 28 | 59.5745 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.9033 | 83.4146 | 78.5388 | 83.2569 | 171 | 34 | 172 | 47 | 28 | 59.5745 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.8856 | 69.5341 | 96.6667 | 66.1290 | 194 | 85 | 203 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.8824 | 93.2203 | 71.4286 | 78.0627 | 55 | 4 | 55 | 22 | 22 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |