PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39401-39450 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 81.2948 | 68.9150 | 99.0964 | 84.0614 | 235 | 106 | 329 | 3 | 2 | 66.6667 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | * | 81.2942 | 87.1691 | 76.1613 | 76.0893 | 40728 | 5995 | 40268 | 12604 | 2812 | 22.3104 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.2926 | 90.9091 | 73.5160 | 70.9163 | 880 | 88 | 966 | 348 | 303 | 87.0690 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2908 | 70.4641 | 96.0486 | 65.7173 | 4039 | 1693 | 4035 | 166 | 29 | 17.4699 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2903 | 68.4783 | 100.0000 | 58.5526 | 63 | 29 | 63 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.2885 | 83.6842 | 79.0262 | 67.0065 | 1113 | 217 | 844 | 224 | 167 | 74.5536 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | * | 81.2819 | 86.2414 | 76.8618 | 75.7478 | 9559 | 1525 | 9547 | 2874 | 784 | 27.2791 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 81.2587 | 87.3786 | 75.9398 | 90.8842 | 90 | 13 | 101 | 32 | 2 | 6.2500 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | * | 81.2573 | 87.2016 | 76.0717 | 63.0432 | 7781 | 1142 | 7808 | 2456 | 275 | 11.1971 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.2556 | 88.9456 | 74.7895 | 89.6153 | 1569 | 195 | 1510 | 509 | 141 | 27.7014 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 81.2553 | 73.6695 | 90.5826 | 44.2627 | 8181 | 2924 | 2068 | 215 | 132 | 61.3953 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 81.2534 | 85.2901 | 77.5815 | 56.2165 | 632 | 109 | 571 | 165 | 144 | 87.2727 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 81.2517 | 69.3391 | 98.1067 | 37.6609 | 640 | 283 | 570 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2500 | 73.2394 | 91.2281 | 63.4615 | 52 | 19 | 52 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | hetalt | 81.2500 | 86.6667 | 76.4706 | 83.4951 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e0 | hetalt | 81.2500 | 86.6667 | 76.4706 | 85.8333 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e1 | hetalt | 81.2500 | 86.6667 | 76.4706 | 85.8333 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | * | 81.2500 | 73.5849 | 90.6977 | 85.1724 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.2500 | 68.4211 | 100.0000 | 96.5570 | 39 | 18 | 45 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 81.2500 | 81.2500 | 81.2500 | 95.3148 | 26 | 6 | 26 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2500 | 70.8752 | 95.1830 | 49.0677 | 494 | 203 | 494 | 25 | 23 | 92.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.7546 | 13 | 3 | 13 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 81.2500 | 72.2222 | 92.8571 | 70.2128 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.2500 | 86.6667 | 76.4706 | 97.8399 | 13 | 2 | 13 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.2637 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 82.3529 | 13 | 6 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 81.2500 | 68.4211 | 100.0000 | 83.3333 | 13 | 6 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | segdup | homalt | 81.2500 | 68.4211 | 100.0000 | 81.1594 | 13 | 6 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 81.2500 | 72.2222 | 92.8571 | 91.7160 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.2482 | 70.2896 | 96.2549 | 70.8872 | 30460 | 12875 | 30456 | 1185 | 636 | 53.6709 | |
| jmaeng-gatk | SNP | ti | map_l150_m2_e1 | * | 81.2473 | 69.4542 | 97.8644 | 88.4201 | 14393 | 6330 | 14389 | 314 | 34 | 10.8280 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.2447 | 68.7055 | 99.3827 | 61.1200 | 483 | 220 | 483 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2428 | 98.3287 | 69.2157 | 47.0954 | 353 | 6 | 353 | 157 | 156 | 99.3631 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2423 | 74.6055 | 89.1753 | 53.3280 | 520 | 177 | 519 | 63 | 62 | 98.4127 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | * | hetalt | 81.2294 | 68.6820 | 99.3860 | 39.2080 | 5873 | 2678 | 3723 | 23 | 17 | 73.9130 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | * | 81.2273 | 86.8110 | 76.3184 | 74.3923 | 25466 | 3869 | 25253 | 7836 | 1746 | 22.2818 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 81.2263 | 68.6424 | 99.4598 | 26.8379 | 5860 | 2677 | 3682 | 20 | 14 | 70.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2248 | 74.4026 | 89.4244 | 27.1457 | 7037 | 2421 | 7644 | 904 | 893 | 98.7832 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.2239 | 97.0100 | 69.8565 | 48.4904 | 584 | 18 | 584 | 252 | 251 | 99.6032 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.2239 | 74.1883 | 89.7338 | 67.9659 | 457 | 159 | 472 | 54 | 43 | 79.6296 | |
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | * | 81.2227 | 72.9412 | 91.6256 | 96.8509 | 558 | 207 | 558 | 51 | 14 | 27.4510 | |