PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39351-39400 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 81.4309 | 72.4324 | 92.9825 | 97.5939 | 134 | 51 | 159 | 12 | 10 | 83.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.4286 | 68.6747 | 100.0000 | 27.2727 | 57 | 26 | 64 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.4282 | 87.3673 | 76.2452 | 66.4309 | 823 | 119 | 796 | 248 | 247 | 99.5968 | |
| ckim-vqsr | SNP | ti | map_l125_m2_e0 | het | 81.4281 | 69.2308 | 98.8426 | 88.6749 | 13068 | 5808 | 13066 | 153 | 3 | 1.9608 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 81.4279 | 69.0962 | 99.1176 | 84.0450 | 237 | 106 | 337 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4251 | 70.6294 | 96.1165 | 91.5574 | 101 | 42 | 99 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.4240 | 70.4268 | 96.4912 | 53.1250 | 231 | 97 | 275 | 10 | 8 | 80.0000 | |
| qzeng-custom | INDEL | * | map_l100_m0_e0 | het | 81.4136 | 75.5142 | 88.3128 | 92.9110 | 771 | 250 | 1005 | 133 | 30 | 22.5564 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| qzeng-custom | SNP | * | map_l150_m2_e1 | * | 81.4031 | 70.2204 | 96.8222 | 87.0167 | 22618 | 9592 | 22364 | 734 | 626 | 85.2861 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.3953 | 85.3659 | 77.7778 | 82.8244 | 35 | 6 | 35 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.3930 | 81.0811 | 81.7073 | 53.8028 | 180 | 42 | 268 | 60 | 33 | 55.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.3873 | 91.4286 | 73.3333 | 93.3628 | 32 | 3 | 33 | 12 | 4 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | * | 81.3853 | 69.2449 | 98.6877 | 86.2752 | 376 | 167 | 376 | 5 | 2 | 40.0000 | |
| anovak-vg | SNP | * | map_l125_m2_e1 | * | 81.3800 | 87.2421 | 76.2560 | 76.1127 | 41180 | 6022 | 40707 | 12675 | 2820 | 22.2485 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | het | 81.3793 | 100.0000 | 68.6047 | 92.0591 | 60 | 0 | 59 | 27 | 20 | 74.0741 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.3778 | 69.3846 | 98.3834 | 31.9182 | 451 | 199 | 426 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 81.3704 | 86.3636 | 76.9231 | 74.5098 | 19 | 3 | 20 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 81.3693 | 71.3832 | 94.6037 | 70.0040 | 11250 | 4510 | 11255 | 642 | 179 | 27.8816 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | homalt | 81.3559 | 70.5882 | 96.0000 | 90.8759 | 24 | 10 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | * | 81.3559 | 72.7273 | 92.3077 | 91.0653 | 24 | 9 | 24 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 81.3559 | 68.5714 | 100.0000 | 76.1905 | 24 | 11 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | func_cds | het | 81.3559 | 82.7586 | 80.0000 | 46.4286 | 24 | 5 | 24 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 81.3544 | 99.1233 | 68.9877 | 64.3634 | 3844 | 34 | 3864 | 1737 | 25 | 1.4393 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.3513 | 68.8197 | 99.4627 | 55.6845 | 1481 | 671 | 1481 | 8 | 5 | 62.5000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | * | 81.3480 | 68.8368 | 99.4174 | 84.4949 | 17404 | 7879 | 17405 | 102 | 20 | 19.6078 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | * | 81.3435 | 69.7154 | 97.6272 | 45.9650 | 6296 | 2735 | 6295 | 153 | 109 | 71.2418 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | homalt | 81.3415 | 82.1429 | 80.5556 | 91.1330 | 23 | 5 | 29 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | HG002complexvar | hetalt | 81.3403 | 72.5266 | 92.5926 | 62.9291 | 887 | 336 | 300 | 24 | 23 | 95.8333 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.3386 | 70.4818 | 96.1491 | 65.8212 | 26714 | 11188 | 26716 | 1070 | 602 | 56.2617 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | het | 81.3293 | 81.0811 | 81.5789 | 88.3436 | 30 | 7 | 31 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 81.3204 | 72.2826 | 92.9412 | 97.5589 | 133 | 51 | 158 | 12 | 10 | 83.3333 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.3153 | 78.8474 | 83.9428 | 62.4516 | 2531 | 679 | 2525 | 483 | 481 | 99.5859 | |
| mlin-fermikit | SNP | tv | map_siren | * | 81.3085 | 72.1446 | 93.1393 | 50.3116 | 33136 | 12794 | 33125 | 2440 | 2002 | 82.0492 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | het | 81.3082 | 69.1532 | 98.6474 | 89.1453 | 20497 | 9143 | 20494 | 281 | 4 | 1.4235 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | * | 81.3077 | 69.4784 | 97.9917 | 88.2788 | 14398 | 6325 | 14394 | 295 | 35 | 11.8644 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | * | 81.3037 | 72.8070 | 92.0455 | 76.5957 | 83 | 31 | 81 | 7 | 6 | 85.7143 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.3034 | 71.2871 | 94.5946 | 91.5813 | 72 | 29 | 70 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | * | map_l150_m2_e1 | * | 81.2984 | 71.5775 | 94.0746 | 94.0057 | 1030 | 409 | 1286 | 81 | 39 | 48.1481 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 81.2972 | 84.9765 | 77.9232 | 58.9542 | 905 | 160 | 893 | 253 | 210 | 83.0040 | |
| qzeng-custom | SNP | * | map_l150_m2_e0 | * | 81.2952 | 70.0678 | 96.8072 | 87.0114 | 22318 | 9534 | 22073 | 728 | 620 | 85.1648 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | * | 81.2950 | 79.0210 | 83.7037 | 88.3520 | 113 | 30 | 113 | 22 | 15 | 68.1818 | |