PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39201-39250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 81.7039 | 73.7672 | 91.5543 | 53.9843 | 2199 | 782 | 1290 | 119 | 114 | 95.7983 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.7029 | 86.3636 | 77.5194 | 87.8531 | 95 | 15 | 100 | 29 | 21 | 72.4138 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.6959 | 69.6629 | 98.7539 | 35.5422 | 186 | 81 | 317 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | homalt | 81.6943 | 69.2244 | 99.6437 | 85.3233 | 839 | 373 | 839 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 81.6911 | 69.4493 | 99.1722 | 56.0007 | 2396 | 1054 | 2396 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | het | 81.6901 | 100.0000 | 69.0476 | 94.4591 | 29 | 0 | 29 | 13 | 8 | 61.5385 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.6901 | 79.4521 | 84.0580 | 91.6566 | 58 | 15 | 58 | 11 | 11 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.6901 | 69.0476 | 100.0000 | 99.4796 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.6869 | 98.0583 | 70.0000 | 59.7641 | 808 | 16 | 812 | 348 | 6 | 1.7241 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 81.6855 | 91.2376 | 73.9439 | 67.5049 | 3686 | 354 | 4061 | 1431 | 1308 | 91.4046 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 81.6849 | 82.4176 | 80.9651 | 86.8337 | 300 | 64 | 302 | 71 | 59 | 83.0986 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.6845 | 71.0843 | 96.0000 | 30.5556 | 59 | 24 | 72 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 81.6840 | 71.9940 | 94.3881 | 86.6528 | 964 | 375 | 1396 | 83 | 16 | 19.2771 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.6794 | 97.9405 | 70.0491 | 45.2509 | 428 | 9 | 428 | 183 | 183 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.6793 | 71.3911 | 95.4321 | 75.7937 | 5994 | 2402 | 5996 | 287 | 72 | 25.0871 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | hetalt | 81.6709 | 72.4696 | 93.5484 | 69.6078 | 179 | 68 | 29 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 81.6667 | 73.1343 | 92.4528 | 88.7712 | 49 | 18 | 49 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.6667 | 74.2424 | 90.7407 | 94.0463 | 49 | 17 | 49 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | * | 81.6618 | 74.5446 | 90.2813 | 93.3861 | 1637 | 559 | 1765 | 190 | 25 | 13.1579 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | * | 81.6618 | 83.6820 | 79.7368 | 89.6132 | 600 | 117 | 606 | 154 | 60 | 38.9610 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.6591 | 71.1864 | 95.7447 | 71.8563 | 42 | 17 | 45 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6587 | 97.5693 | 70.2096 | 85.8214 | 8911 | 222 | 8977 | 3809 | 26 | 0.6826 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6587 | 97.5693 | 70.2096 | 85.8214 | 8911 | 222 | 8977 | 3809 | 26 | 0.6826 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 81.6561 | 69.2510 | 99.4755 | 31.4587 | 2635 | 1170 | 2655 | 14 | 14 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | * | 81.6558 | 71.3118 | 95.5098 | 73.5540 | 8725 | 3510 | 8721 | 410 | 263 | 64.1463 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.6541 | 71.2598 | 95.5986 | 79.6197 | 543 | 219 | 543 | 25 | 5 | 20.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | homalt | 81.6539 | 83.7838 | 79.6296 | 89.2644 | 31 | 6 | 43 | 11 | 10 | 90.9091 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | het | 81.6533 | 76.9704 | 86.9429 | 74.2795 | 34913 | 10446 | 34838 | 5232 | 159 | 3.0390 | |
| gduggal-snapplat | INDEL | * | func_cds | homalt | 81.6523 | 71.6814 | 94.8454 | 31.4488 | 162 | 64 | 184 | 10 | 1 | 10.0000 | |
| qzeng-custom | SNP | * | map_l150_m2_e0 | het | 81.6474 | 71.2611 | 95.5780 | 89.7912 | 14347 | 5786 | 14222 | 658 | 550 | 83.5866 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.6460 | 74.6599 | 90.0744 | 85.4526 | 1317 | 447 | 1452 | 160 | 15 | 9.3750 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.6457 | 73.4098 | 91.9631 | 60.0526 | 704 | 255 | 698 | 61 | 38 | 62.2951 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.6412 | 91.8702 | 73.4619 | 47.8010 | 6170 | 546 | 6173 | 2230 | 2203 | 98.7892 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.6400 | 76.3498 | 87.7178 | 52.8542 | 1004 | 311 | 1007 | 141 | 123 | 87.2340 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.6327 | 100.0000 | 68.9655 | 99.9497 | 21 | 0 | 20 | 9 | 9 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.6327 | 83.3333 | 80.0000 | 90.0000 | 5 | 1 | 4 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | hetalt | 81.6327 | 68.9655 | 100.0000 | 88.0952 | 20 | 9 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m0_e0 | homalt | 81.6311 | 69.2951 | 99.3106 | 61.6670 | 5387 | 2387 | 5330 | 37 | 36 | 97.2973 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.6311 | 77.0492 | 86.7925 | 78.4553 | 47 | 14 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | het | 81.6296 | 74.3590 | 90.4762 | 83.5938 | 29 | 10 | 38 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | HG002compoundhet | het | 81.6272 | 92.2353 | 73.2075 | 84.1151 | 784 | 66 | 776 | 284 | 279 | 98.2394 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.6262 | 69.9242 | 98.0323 | 76.4744 | 2490 | 1071 | 2491 | 50 | 39 | 78.0000 | |