PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39051-39100 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | tv | map_siren | homalt | 81.9952 | 77.9060 | 86.5373 | 48.2163 | 13431 | 3809 | 13428 | 2089 | 1999 | 95.6917 | |
| ckim-isaac | SNP | tv | map_siren | * | 81.9877 | 69.5646 | 99.8126 | 55.0084 | 31951 | 13979 | 31956 | 60 | 25 | 41.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.9826 | 70.2857 | 98.3498 | 45.7961 | 123 | 52 | 298 | 5 | 4 | 80.0000 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | het | 81.9772 | 77.3999 | 87.1298 | 75.6982 | 36299 | 10599 | 36219 | 5350 | 161 | 3.0094 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 81.9762 | 69.7710 | 99.3570 | 62.1268 | 4143 | 1795 | 4172 | 27 | 27 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | homalt | 81.9655 | 70.0220 | 98.8211 | 73.9641 | 2859 | 1224 | 2850 | 34 | 34 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.9633 | 76.1261 | 88.7701 | 48.1994 | 169 | 53 | 166 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 81.9605 | 70.3226 | 98.2143 | 87.3303 | 109 | 46 | 110 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 81.9603 | 79.1667 | 84.9582 | 78.0562 | 304 | 80 | 305 | 54 | 43 | 79.6296 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.9563 | 92.6437 | 73.4797 | 72.5162 | 403 | 32 | 435 | 157 | 14 | 8.9172 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.9533 | 97.9730 | 70.4362 | 86.4433 | 435 | 9 | 436 | 183 | 145 | 79.2350 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| ckim-isaac | INDEL | I6_15 | * | hetalt | 81.9509 | 69.9567 | 98.9089 | 28.8855 | 5982 | 2569 | 5983 | 66 | 52 | 78.7879 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | homalt | 81.9487 | 86.8512 | 77.5701 | 62.8472 | 251 | 38 | 249 | 72 | 72 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.9462 | 89.6097 | 75.4902 | 79.0668 | 1630 | 189 | 1463 | 475 | 410 | 86.3158 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.9462 | 89.6097 | 75.4902 | 79.0668 | 1630 | 189 | 1463 | 475 | 410 | 86.3158 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | homalt | 81.9444 | 69.4118 | 100.0000 | 94.5573 | 59 | 26 | 67 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | homalt | 81.9434 | 80.0871 | 83.8878 | 86.5926 | 1287 | 320 | 1286 | 247 | 174 | 70.4453 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.9433 | 88.0000 | 76.6667 | 85.7820 | 22 | 3 | 23 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 81.9397 | 72.4014 | 94.3726 | 87.2379 | 1010 | 385 | 1459 | 87 | 16 | 18.3908 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | homalt | 81.9370 | 72.8155 | 93.6709 | 46.7416 | 225 | 84 | 222 | 15 | 7 | 46.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.9324 | 70.9821 | 96.8774 | 72.2175 | 1272 | 520 | 1272 | 41 | 32 | 78.0488 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.9280 | 69.6538 | 99.4536 | 27.2366 | 342 | 149 | 364 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 94.3005 | 34 | 15 | 33 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 90.0000 | 34 | 15 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.9277 | 95.7746 | 71.5789 | 51.0309 | 68 | 3 | 68 | 27 | 27 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 81.9169 | 82.5269 | 81.3158 | 86.8147 | 307 | 65 | 309 | 71 | 59 | 83.0986 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | het | 81.9153 | 76.2712 | 88.4615 | 80.2281 | 45 | 14 | 46 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9149 | 70.4805 | 97.7778 | 45.5017 | 308 | 129 | 308 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | homalt | 81.9113 | 82.7586 | 81.0811 | 91.0412 | 24 | 5 | 30 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 81.9098 | 72.2953 | 94.4737 | 87.2301 | 989 | 379 | 1436 | 84 | 16 | 19.0476 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | * | 81.9080 | 78.5855 | 85.5238 | 80.3591 | 400 | 109 | 449 | 76 | 58 | 76.3158 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.9075 | 85.8815 | 78.2851 | 78.2609 | 3376 | 555 | 3378 | 937 | 16 | 1.7076 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | het | 81.9000 | 89.8765 | 75.2239 | 57.3791 | 364 | 41 | 252 | 83 | 82 | 98.7952 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.8991 | 87.2340 | 77.1791 | 62.6848 | 492 | 72 | 487 | 144 | 112 | 77.7778 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.8937 | 73.5294 | 92.4051 | 90.6509 | 75 | 27 | 73 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.8879 | 70.7317 | 97.2222 | 86.6171 | 29 | 12 | 35 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | het | 81.8860 | 88.2920 | 76.3466 | 87.4430 | 641 | 85 | 652 | 202 | 65 | 32.1782 | |
| anovak-vg | SNP | tv | map_l250_m2_e1 | homalt | 81.8854 | 69.7674 | 99.0977 | 89.2430 | 660 | 286 | 659 | 6 | 4 | 66.6667 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | het | 81.8850 | 77.2883 | 87.0629 | 75.7023 | 35861 | 10538 | 35782 | 5317 | 161 | 3.0280 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 81.8829 | 73.3939 | 92.5926 | 62.2269 | 1131 | 410 | 1825 | 146 | 139 | 95.2055 | |