PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38651-38700 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | ti | map_l100_m1_e0 | het | 82.8228 | 70.7902 | 99.7835 | 65.4154 | 21196 | 8746 | 21200 | 46 | 4 | 8.6957 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | * | 82.8217 | 70.9791 | 99.4075 | 82.3292 | 52499 | 21465 | 52511 | 313 | 86 | 27.4760 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 82.8200 | 73.8119 | 94.3324 | 59.6824 | 2982 | 1058 | 5892 | 354 | 254 | 71.7514 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 82.8097 | 70.7958 | 99.7345 | 26.8052 | 4875 | 2011 | 4883 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.8096 | 94.2598 | 73.8399 | 86.2952 | 10181 | 620 | 10009 | 3546 | 141 | 3.9763 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.8053 | 79.1762 | 86.7830 | 47.8544 | 346 | 91 | 348 | 53 | 41 | 77.3585 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | homalt | 82.8025 | 72.2222 | 97.0149 | 78.0328 | 65 | 25 | 65 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | het | 82.8019 | 79.7203 | 86.1314 | 81.4363 | 114 | 29 | 118 | 19 | 17 | 89.4737 | |
| gduggal-bwaplat | INDEL | D6_15 | * | hetalt | 82.8017 | 71.8008 | 97.7833 | 50.4460 | 5869 | 2305 | 5867 | 133 | 131 | 98.4962 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | * | 82.8010 | 79.0049 | 86.9802 | 71.6783 | 19357 | 5144 | 19347 | 2896 | 701 | 24.2058 | |
| qzeng-custom | SNP | ti | map_l125_m1_e0 | * | 82.7982 | 71.8971 | 97.5960 | 82.1188 | 21091 | 8244 | 20948 | 516 | 435 | 84.3023 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7974 | 80.3556 | 85.3922 | 44.8533 | 949 | 232 | 947 | 162 | 161 | 99.3827 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 82.7930 | 72.1739 | 97.0760 | 60.0467 | 166 | 64 | 166 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.7904 | 78.6275 | 87.4187 | 53.2630 | 15617 | 4245 | 16259 | 2340 | 997 | 42.6068 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 82.7833 | 96.8858 | 72.2646 | 69.0795 | 280 | 9 | 284 | 109 | 30 | 27.5229 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 82.7813 | 80.4513 | 85.2502 | 40.8125 | 3280 | 797 | 3254 | 563 | 503 | 89.3428 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | hetalt | 82.7740 | 82.2222 | 83.3333 | 86.0465 | 37 | 8 | 10 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 82.7722 | 73.3564 | 94.9612 | 95.8904 | 212 | 77 | 245 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.7698 | 70.8758 | 99.4609 | 27.5391 | 348 | 143 | 369 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.7698 | 70.8758 | 99.4609 | 27.5391 | 348 | 143 | 369 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7690 | 74.1259 | 93.6937 | 90.8036 | 106 | 37 | 104 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 82.7682 | 83.3333 | 82.2107 | 69.9221 | 470 | 94 | 476 | 103 | 33 | 32.0388 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.7666 | 91.0205 | 75.8851 | 82.6190 | 17820 | 1758 | 17704 | 5626 | 180 | 3.1994 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 82.7666 | 91.0205 | 75.8851 | 82.6190 | 17820 | 1758 | 17704 | 5626 | 180 | 3.1994 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | het | 82.7631 | 72.8602 | 95.7815 | 86.9859 | 15450 | 5755 | 15326 | 675 | 562 | 83.2593 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 82.7602 | 77.8800 | 88.2929 | 83.1252 | 2116 | 601 | 2255 | 299 | 150 | 50.1672 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.1565 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.9831 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 79.1667 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.3433 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 88.7931 | 12 | 4 | 12 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 78.0702 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.4688 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.6202 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | het | 82.7586 | 73.4694 | 94.7368 | 66.9565 | 36 | 13 | 36 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 82.7586 | 80.0000 | 85.7143 | 96.2466 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 95.5172 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.3966 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 98.8362 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 96.7089 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 97.7199 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||