PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38501-38550 / 86044 show all | |||||||||||||||
| ckim-isaac | SNP | ti | map_l100_m2_e1 | het | 83.1462 | 71.2597 | 99.7920 | 67.1300 | 22062 | 8898 | 22066 | 46 | 4 | 8.6957 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.1458 | 71.4848 | 99.3528 | 29.1555 | 1815 | 724 | 1842 | 12 | 9 | 75.0000 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | het | 83.1453 | 72.9498 | 96.6538 | 86.6306 | 13770 | 5106 | 13720 | 475 | 387 | 81.4737 | |
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | het | 83.1436 | 87.7585 | 78.9898 | 84.5440 | 1061 | 148 | 1079 | 287 | 92 | 32.0557 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.1419 | 76.6600 | 90.8213 | 72.4184 | 381 | 116 | 376 | 38 | 25 | 65.7895 | |
| qzeng-custom | SNP | tv | map_l150_m1_e0 | het | 83.1414 | 73.6683 | 95.4104 | 89.4270 | 5117 | 1829 | 5114 | 246 | 203 | 82.5203 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.1375 | 89.8020 | 77.3938 | 60.0848 | 3628 | 412 | 8600 | 2512 | 1214 | 48.3280 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.1362 | 81.1475 | 85.2248 | 77.0629 | 396 | 92 | 398 | 69 | 22 | 31.8841 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.1359 | 92.9012 | 75.2282 | 88.8693 | 1204 | 92 | 1236 | 407 | 118 | 28.9926 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.1329 | 78.1250 | 88.8268 | 67.2461 | 225 | 63 | 318 | 40 | 25 | 62.5000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.1319 | 71.6717 | 98.9545 | 46.3244 | 1895 | 749 | 1893 | 20 | 17 | 85.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 83.1300 | 71.9298 | 98.4615 | 91.6560 | 164 | 64 | 192 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 83.1268 | 71.4871 | 99.2941 | 36.3772 | 1221 | 487 | 422 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.1246 | 82.0664 | 84.2105 | 65.4096 | 1112 | 243 | 896 | 168 | 107 | 63.6905 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.1236 | 82.5688 | 83.6858 | 64.5989 | 360 | 76 | 1108 | 216 | 72 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.1234 | 93.2203 | 75.0000 | 71.9101 | 55 | 4 | 75 | 25 | 18 | 72.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 83.1234 | 88.2353 | 78.5714 | 94.2857 | 15 | 2 | 11 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | het | 83.1200 | 94.8090 | 73.9970 | 89.3957 | 968 | 53 | 1457 | 512 | 171 | 33.3984 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | het | 83.1185 | 71.8519 | 98.5755 | 24.7427 | 291 | 114 | 1730 | 25 | 25 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.1169 | 72.7273 | 96.9697 | 96.7836 | 32 | 12 | 32 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1169 | 74.4186 | 94.1176 | 57.5000 | 32 | 11 | 32 | 2 | 1 | 50.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.1169 | 76.1905 | 91.4286 | 87.5887 | 32 | 10 | 32 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1167 | 92.6829 | 75.3404 | 62.6343 | 152 | 12 | 498 | 163 | 50 | 30.6748 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.1128 | 95.5215 | 73.5573 | 89.2251 | 1685 | 79 | 1708 | 614 | 76 | 12.3779 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 83.1109 | 76.3884 | 91.1308 | 38.7228 | 4154 | 1284 | 411 | 40 | 40 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.1099 | 71.1009 | 100.0000 | 26.0069 | 620 | 252 | 643 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | * | 83.1087 | 87.9310 | 78.7879 | 94.7577 | 51 | 7 | 52 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | * | 83.1087 | 72.8830 | 96.6721 | 87.1352 | 8383 | 3119 | 8366 | 288 | 243 | 84.3750 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 83.1081 | 75.0000 | 93.1818 | 44.3038 | 39 | 13 | 41 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 83.1025 | 78.7956 | 87.9076 | 66.5360 | 2787 | 750 | 2777 | 382 | 238 | 62.3037 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0949 | 95.8388 | 73.3424 | 87.1802 | 1451 | 63 | 1073 | 390 | 39 | 10.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 83.0948 | 80.0643 | 86.3636 | 58.1871 | 249 | 62 | 247 | 39 | 38 | 97.4359 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.0914 | 93.1398 | 75.0000 | 56.9061 | 353 | 26 | 351 | 117 | 113 | 96.5812 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | het | 83.0864 | 88.0801 | 78.6286 | 53.0695 | 12488 | 1690 | 12671 | 3444 | 265 | 7.6945 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | homalt | 83.0837 | 72.9730 | 96.4467 | 92.5730 | 351 | 130 | 380 | 14 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | func_cds | * | 83.0794 | 82.2472 | 83.9286 | 43.6242 | 366 | 79 | 423 | 81 | 65 | 80.2469 | |
| eyeh-varpipe | INDEL | I6_15 | * | het | 83.0781 | 80.3150 | 86.0381 | 40.9246 | 8058 | 1975 | 8048 | 1306 | 1290 | 98.7749 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | het | 83.0777 | 72.2504 | 97.7221 | 87.1675 | 427 | 164 | 429 | 10 | 3 | 30.0000 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | * | 83.0739 | 79.3893 | 87.1172 | 73.4544 | 20072 | 5211 | 20057 | 2966 | 720 | 24.2751 | |
| ckim-isaac | SNP | ti | map_l100_m2_e0 | het | 83.0715 | 71.1515 | 99.7894 | 67.1619 | 21788 | 8834 | 21792 | 46 | 4 | 8.6957 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.0700 | 72.7273 | 96.8421 | 89.2290 | 96 | 36 | 92 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | het | 83.0604 | 98.2143 | 71.9577 | 88.5593 | 275 | 5 | 272 | 106 | 86 | 81.1321 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.0601 | 86.3636 | 80.0000 | 75.4902 | 19 | 3 | 20 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 83.0598 | 71.3760 | 99.3174 | 53.6319 | 2910 | 1167 | 2910 | 20 | 10 | 50.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.0586 | 77.6471 | 89.2809 | 34.5471 | 660 | 190 | 658 | 79 | 79 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.0581 | 82.1038 | 84.0349 | 57.1491 | 1725 | 376 | 1637 | 311 | 307 | 98.7138 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.8626 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |