PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38351-38400 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 97.6109 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.5000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.2381 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 96.6346 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 95.2273 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 87.7551 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 99.7121 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0588 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0711 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.0233 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 93.8776 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.2963 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 96.3351 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 93.7500 | 75.0000 | 94.6524 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 94.7090 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 97.0954 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 97.1429 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.2906 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.6631 | 5 | 2 | 5 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 86.0465 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 98.5542 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 83.3333 | 75.0000 | 93.7500 | 82.6087 | 15 | 5 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.7047 | 5 | 2 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 93.7500 | 75.0000 | 95.8848 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 95.9184 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4820 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.4910 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 71.4286 | 100.0000 | 99.8911 | 15 | 6 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m0_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 93.9130 | 7 | 0 | 10 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 89.4737 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | homalt | 83.3333 | 83.3333 | 83.3333 | 45.4545 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.3333 | 83.3333 | 83.3333 | 99.3536 | 35 | 7 | 40 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.3471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.3333 | 71.4286 | 100.0000 | 70.1613 | 35 | 14 | 37 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 100.0000 | 71.4286 | 97.7636 | 7 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 97.6471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 83.3333 | 71.4286 | 100.0000 | 99.7405 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 83.3333 | 83.3333 | 83.3333 | 98.4085 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |