PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38151-38200 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | map_l100_m2_e1 | * | 83.6965 | 89.4751 | 78.6189 | 71.8943 | 22622 | 2661 | 22577 | 6140 | 1324 | 21.5635 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | het | 83.6960 | 96.5705 | 73.8504 | 58.8480 | 3013 | 107 | 2923 | 1035 | 940 | 90.8213 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.6943 | 72.8549 | 98.3229 | 36.6534 | 467 | 174 | 469 | 8 | 6 | 75.0000 | |
| gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.6913 | 81.6092 | 85.8824 | 87.5549 | 71 | 16 | 73 | 12 | 6 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.6913 | 86.7444 | 80.8458 | 71.7974 | 1636 | 250 | 1625 | 385 | 278 | 72.2078 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.6868 | 98.6611 | 72.6589 | 66.9839 | 17612 | 239 | 17869 | 6724 | 214 | 3.1826 | |
| qzeng-custom | SNP | tv | map_l150_m2_e1 | het | 83.6864 | 74.4284 | 95.5746 | 89.7620 | 5469 | 1879 | 5464 | 253 | 208 | 82.2134 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.6842 | 98.7578 | 72.6027 | 36.7052 | 159 | 2 | 159 | 60 | 60 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.6839 | 72.6708 | 98.6312 | 33.2487 | 1287 | 484 | 1297 | 18 | 13 | 72.2222 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.6814 | 77.2332 | 91.3043 | 82.9887 | 977 | 288 | 1029 | 98 | 59 | 60.2041 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.6741 | 97.8739 | 73.0725 | 38.0893 | 6537 | 142 | 6947 | 2560 | 2496 | 97.5000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.6672 | 72.2973 | 99.2806 | 87.5224 | 107 | 41 | 138 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.6651 | 85.4732 | 81.9319 | 70.4517 | 1165 | 198 | 1179 | 260 | 119 | 45.7692 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.6639 | 97.9752 | 73.0007 | 49.9045 | 8226 | 170 | 8617 | 3187 | 3103 | 97.3643 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.6630 | 95.0637 | 74.7040 | 77.8987 | 1194 | 62 | 1199 | 406 | 377 | 92.8571 | |
| ckim-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.6574 | 71.9327 | 99.9485 | 66.2938 | 19424 | 7579 | 19424 | 10 | 7 | 70.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.6527 | 80.4403 | 87.1324 | 45.1060 | 950 | 231 | 948 | 140 | 140 | 100.0000 | |
| ciseli-custom | INDEL | * | HG002complexvar | het | 83.6520 | 81.8863 | 85.4955 | 58.3237 | 37838 | 8370 | 38019 | 6450 | 2732 | 42.3566 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.6519 | 73.9268 | 96.3233 | 56.4236 | 6992 | 2466 | 6995 | 267 | 204 | 76.4045 | |
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.6479 | 73.1252 | 97.7082 | 43.0315 | 5246 | 1928 | 5244 | 123 | 121 | 98.3740 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.6454 | 99.5085 | 72.1445 | 74.1800 | 1822 | 9 | 1857 | 717 | 13 | 1.8131 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | het | 83.6409 | 73.8031 | 96.5049 | 50.3136 | 817 | 290 | 994 | 36 | 33 | 91.6667 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | het | 83.6399 | 73.7567 | 96.5816 | 86.1149 | 20941 | 7451 | 20766 | 735 | 611 | 83.1293 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | het | 83.6364 | 76.6667 | 92.0000 | 89.6266 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | het | 83.6364 | 76.6667 | 92.0000 | 90.6015 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | het | 83.6364 | 76.6667 | 92.0000 | 90.8425 | 23 | 7 | 23 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | HG002compoundhet | homalt | 83.6364 | 95.8333 | 74.1935 | 78.9116 | 23 | 1 | 23 | 8 | 7 | 87.5000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.8333 | 46 | 18 | 46 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 83.6364 | 74.1935 | 95.8333 | 87.8173 | 23 | 8 | 23 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | homalt | 83.6364 | 71.8750 | 100.0000 | 80.6723 | 46 | 18 | 46 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | HG002compoundhet | het | 83.6361 | 90.0158 | 78.1008 | 46.8217 | 8556 | 949 | 8677 | 2433 | 181 | 7.4394 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.6346 | 82.9843 | 84.2953 | 47.3907 | 18464 | 3786 | 18534 | 3453 | 3234 | 93.6577 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.6341 | 95.4545 | 74.4186 | 96.0148 | 63 | 3 | 64 | 22 | 2 | 9.0909 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.6326 | 78.2787 | 89.7727 | 73.4807 | 382 | 106 | 474 | 54 | 50 | 92.5926 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | het | 83.6323 | 80.1110 | 87.4775 | 89.7782 | 1877 | 466 | 2431 | 348 | 54 | 15.5172 | |
| ciseli-custom | INDEL | D1_5 | map_siren | * | 83.6317 | 82.1196 | 85.2005 | 84.5008 | 2898 | 631 | 2890 | 502 | 233 | 46.4143 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.6293 | 78.9187 | 88.9381 | 47.0175 | 3766 | 1006 | 1809 | 225 | 103 | 45.7778 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | * | 83.6288 | 89.4260 | 78.5375 | 71.8835 | 22386 | 2647 | 22351 | 6108 | 1319 | 21.5946 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | homalt | 83.6240 | 73.9187 | 96.2629 | 86.5020 | 564 | 199 | 747 | 29 | 11 | 37.9310 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.6237 | 71.8563 | 100.0000 | 63.5714 | 120 | 47 | 51 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | * | 83.6206 | 72.1656 | 99.3982 | 81.0322 | 35333 | 13628 | 35344 | 214 | 67 | 31.3084 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | het | 83.6174 | 95.9551 | 74.0909 | 89.7946 | 1281 | 54 | 1793 | 627 | 240 | 38.2775 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | homalt | 83.6128 | 72.2475 | 99.2214 | 67.7362 | 12553 | 4822 | 12362 | 97 | 96 | 98.9691 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.6123 | 74.0570 | 95.9987 | 49.9006 | 2886 | 1011 | 2903 | 121 | 83 | 68.5950 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 83.6115 | 80.8511 | 86.5672 | 94.8102 | 38 | 9 | 58 | 9 | 3 | 33.3333 | |
| gduggal-snapplat | INDEL | I1_5 | * | homalt | 83.6103 | 76.4695 | 92.2220 | 62.8436 | 46209 | 14219 | 46704 | 3939 | 356 | 9.0378 | |