PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38051-38100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | * | 83.8794 | 96.1957 | 74.3590 | 95.6707 | 177 | 7 | 174 | 60 | 4 | 6.6667 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.8725 | 78.8462 | 89.5833 | 67.1233 | 41 | 11 | 43 | 5 | 2 | 40.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 83.8715 | 77.0358 | 92.0384 | 65.7901 | 1419 | 423 | 1341 | 116 | 85 | 73.2759 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 83.8710 | 76.4706 | 92.8571 | 91.5663 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m0_e0 | het | 83.8710 | 86.6667 | 81.2500 | 98.8131 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m1_e0 | * | 83.8710 | 73.5849 | 97.5000 | 86.4865 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e0 | * | 83.8710 | 73.5849 | 97.5000 | 88.4058 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l125_m2_e1 | * | 83.8710 | 73.5849 | 97.5000 | 88.7955 | 39 | 14 | 39 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 96.8872 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 83.8710 | 86.6667 | 81.2500 | 96.8932 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m1_e0 | het | 83.8710 | 92.8571 | 76.4706 | 97.2039 | 13 | 1 | 13 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | homalt | 83.8710 | 76.4706 | 92.8571 | 87.8788 | 26 | 8 | 26 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.8710 | 72.2222 | 100.0000 | 73.9130 | 13 | 5 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8710 | 72.2706 | 99.9075 | 34.6038 | 1079 | 414 | 1080 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.8710 | 95.1220 | 75.0000 | 87.3786 | 39 | 2 | 39 | 13 | 13 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | tech_badpromoters | * | 83.8710 | 76.4706 | 92.8571 | 56.2500 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.8710 | 72.2222 | 100.0000 | 64.4231 | 78 | 30 | 74 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | het | 83.8710 | 76.4706 | 92.8571 | 81.5789 | 13 | 4 | 13 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | het | 83.8710 | 76.4706 | 92.8571 | 91.8129 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 83.8710 | 86.6667 | 81.2500 | 93.6759 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 83.8710 | 86.6667 | 81.2500 | 94.3860 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 83.8710 | 86.6667 | 81.2500 | 94.5299 | 26 | 4 | 26 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | het | 83.8710 | 76.4706 | 92.8571 | 93.3333 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | * | 83.8704 | 73.7765 | 97.1641 | 86.1398 | 12165 | 4324 | 12163 | 355 | 14 | 3.9437 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | het | 83.8663 | 72.7617 | 98.9708 | 93.0529 | 577 | 216 | 577 | 6 | 1 | 16.6667 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | * | 83.8659 | 73.5398 | 97.5657 | 83.0916 | 34360 | 12363 | 33987 | 848 | 710 | 83.7264 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | homalt | 83.8633 | 78.1513 | 90.4762 | 30.4636 | 93 | 26 | 95 | 10 | 1 | 10.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 83.8622 | 76.0787 | 93.4198 | 53.8889 | 1005 | 316 | 1008 | 71 | 48 | 67.6056 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.8527 | 73.6525 | 97.3325 | 72.7994 | 11355 | 4062 | 11348 | 311 | 304 | 97.7492 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.8511 | 96.7311 | 73.9980 | 86.2278 | 6658 | 225 | 6739 | 2368 | 15 | 0.6334 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.8498 | 75.7576 | 93.8776 | 89.0990 | 100 | 32 | 92 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.8465 | 88.9667 | 79.2835 | 61.5799 | 508 | 63 | 509 | 133 | 56 | 42.1053 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002compoundhet | homalt | 83.8462 | 99.3921 | 72.5055 | 83.0068 | 327 | 2 | 327 | 124 | 123 | 99.1935 | |
| gduggal-bwaplat | INDEL | D1_5 | * | hetalt | 83.8440 | 73.7042 | 97.2186 | 75.9425 | 7551 | 2694 | 7550 | 216 | 214 | 99.0741 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 83.8428 | 86.4865 | 81.3559 | 96.8108 | 96 | 15 | 96 | 22 | 2 | 9.0909 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | * | 83.8356 | 100.0000 | 72.1698 | 67.3846 | 157 | 0 | 153 | 59 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_siren | * | 83.8340 | 77.0310 | 91.9549 | 78.2144 | 5708 | 1702 | 5715 | 500 | 406 | 81.2000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 83.8326 | 78.4242 | 90.0421 | 57.6603 | 647 | 178 | 642 | 71 | 69 | 97.1831 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 83.8326 | 78.4242 | 90.0421 | 57.6603 | 647 | 178 | 642 | 71 | 69 | 97.1831 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 83.8286 | 85.9247 | 81.8323 | 83.8435 | 525 | 86 | 527 | 117 | 100 | 85.4701 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | het | 83.8279 | 72.7156 | 98.9492 | 92.4321 | 565 | 212 | 565 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | het | 83.8269 | 79.3103 | 88.8889 | 40.0000 | 23 | 6 | 24 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.8258 | 90.7659 | 77.8716 | 35.7639 | 2074 | 211 | 2305 | 655 | 476 | 72.6718 | |
| qzeng-custom | INDEL | D16_PLUS | * | homalt | 83.8251 | 97.1040 | 73.7410 | 65.8948 | 1643 | 49 | 1640 | 584 | 105 | 17.9795 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 83.8208 | 83.5938 | 84.0491 | 91.4391 | 107 | 21 | 137 | 26 | 6 | 23.0769 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8207 | 76.4233 | 92.8036 | 43.9496 | 1141 | 352 | 619 | 48 | 37 | 77.0833 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | homalt | 83.8172 | 72.6621 | 99.0185 | 65.9234 | 4258 | 1602 | 4237 | 42 | 42 | 100.0000 | |