PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37851-37900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | het | 84.2801 | 77.7302 | 92.0354 | 96.9671 | 726 | 208 | 728 | 63 | 27 | 42.8571 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.2767 | 81.7073 | 87.0130 | 73.5395 | 67 | 15 | 67 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 90.1449 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 89.7281 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | * | 84.2732 | 79.4995 | 89.6568 | 87.9718 | 2986 | 770 | 3840 | 443 | 69 | 15.5756 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.2729 | 74.8150 | 96.4680 | 58.6163 | 7786 | 2621 | 7784 | 285 | 97 | 34.0351 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | het | 84.2722 | 97.1154 | 74.4292 | 84.1189 | 202 | 6 | 163 | 56 | 55 | 98.2143 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 84.2675 | 79.8913 | 89.1509 | 81.5972 | 882 | 222 | 945 | 115 | 66 | 57.3913 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | * | 84.2656 | 95.6932 | 75.2762 | 90.8080 | 2533 | 114 | 2521 | 828 | 30 | 3.6232 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.2619 | 97.2450 | 74.3373 | 66.4617 | 2612 | 74 | 2636 | 910 | 12 | 1.3187 | |
| jmaeng-gatk | SNP | * | map_l150_m1_e0 | het | 84.2606 | 74.8343 | 96.4038 | 89.9614 | 14455 | 4861 | 14449 | 539 | 39 | 7.2356 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | * | 84.2603 | 88.9000 | 80.0809 | 71.0026 | 65754 | 8210 | 64960 | 16158 | 3566 | 22.0696 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | * | 84.2599 | 92.9825 | 77.0335 | 96.0759 | 106 | 8 | 161 | 48 | 13 | 27.0833 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2511 | 94.1176 | 76.2570 | 66.9437 | 272 | 17 | 273 | 85 | 60 | 70.5882 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 84.2502 | 73.7903 | 98.1651 | 91.8045 | 183 | 65 | 214 | 4 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | * | 84.2482 | 73.6462 | 98.4160 | 83.3218 | 1428 | 511 | 1429 | 23 | 11 | 47.8261 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 84.2469 | 73.5537 | 98.5782 | 91.9064 | 178 | 64 | 208 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.2444 | 82.4369 | 86.1329 | 57.6838 | 1732 | 369 | 1646 | 265 | 260 | 98.1132 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | het | 84.2439 | 95.0000 | 75.6757 | 97.2253 | 57 | 3 | 56 | 18 | 4 | 22.2222 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | * | 84.2312 | 79.3934 | 89.6968 | 87.9330 | 2932 | 761 | 3787 | 435 | 68 | 15.6322 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.2223 | 89.4397 | 79.5802 | 65.5942 | 415 | 49 | 417 | 107 | 106 | 99.0654 | |
| ckim-gatk | SNP | * | map_l125_m1_e0 | * | 84.2159 | 73.9471 | 97.7967 | 84.1626 | 33518 | 11809 | 33512 | 755 | 58 | 7.6821 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 84.2141 | 73.5864 | 98.4298 | 33.7451 | 950 | 341 | 1003 | 16 | 15 | 93.7500 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | homalt | 84.2134 | 72.7551 | 99.9555 | 67.5514 | 20223 | 7573 | 20223 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 45.0000 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 89.3333 | 8 | 3 | 8 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | decoy | * | 84.2105 | 80.0000 | 88.8889 | 99.9574 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | tech_badpromoters | het | 84.2105 | 80.0000 | 88.8889 | 59.0909 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 84.2105 | 72.7273 | 100.0000 | 96.0610 | 32 | 12 | 31 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 84.2105 | 80.0000 | 88.8889 | 97.0000 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 97.1910 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 96.6346 | 8 | 3 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.2105 | 80.0000 | 88.8889 | 99.5929 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.0000 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.5556 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 84.2105 | 72.7273 | 100.0000 | 81.0811 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 94.4444 | 24 | 9 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 84.2105 | 88.8889 | 80.0000 | 95.9184 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.5870 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 84.2105 | 88.8889 | 80.0000 | 96.5986 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 75.5556 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 96.2264 | 8 | 1 | 8 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | * | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | hetalt | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | hetalt | 84.2105 | 88.8889 | 80.0000 | 90.9910 | 8 | 1 | 8 | 2 | 2 | 100.0000 | |